| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Gbem_2904 |
|---|
| Symbol | |
|---|
| ID | 6779757 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Geobacter bemidjiensis Bem |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011146 |
|---|
| Strand | - |
|---|
| Start bp | 3350707 |
|---|
| End bp | 3351429 |
|---|
| Gene Length | 723 bp |
|---|
| Protein Length | 240 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 642768898 |
|---|
| Product | GntR domain protein |
|---|
| Protein accession | YP_002139703 |
|---|
| Protein GI | 197119276 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG2186] Transcriptional regulators |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.00111996 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAATTTA CGCCGATAAA ACCGAAAAAA GTATCGACCC AGATCGCGGA GCAGATCCGC
AGTTCCATAC TGGCCGGCGA GTTCAACCCG GGGGAGAAGC TTCCCCCCGA GCGCGAGCTT
GCCGAGCTTT TCGGCGTCTC CCGTCCTTCG GTGCGCGAGG CGCTCAACAT CCTTACCTCC
TCCGGACTCG TCGAGACCTA TCAAGGGGGG GGCACGCTGG TCCGTTCCCT GGTGGAGAAC
TCCGCCGGGA TGCCGCTCTC CGAGCTGATC CGCATTGACG GCGACCGTGC CCTCGACGTG
ATCGAAGTGC GCAAGGGGAT GGAGTCCTGG ACCGCCTGGT ACGCCGCTAC CCGGGCGCTC
CCCGAGGACG TTCGGCGCCT GCAGGTTGTT GTCGACGGCA TGGCCAAAAA CCTGGAGCAG
CTGAAGGCTT CGGAGGATTT CGACGCCCAC TTCCACATGC TGGTCGCCCG CGCCACCCAC
AACGTGGTCT GGGGCCACAT GATGCAGAGC ATTTTCGAGG CGATGCAGGA GTTCCAGCGC
GACGTCTGGC GCGCCGTTTA TATGACGGAG GAGGACCAGC GCCTGCTCTT CAGCCACCAC
CTGAAGATCT ATGAGATGAT CAGGGACCGC GACGCCGACG GCGCGAGAGT GGCCATGCTC
GAGCACCTGG ACTTCGCGCA GAAGAGATGC TCCGCCTACG TCTCCATGCG CGGCACCGAA
TAA
|
|---|
| Protein sequence | MKFTPIKPKK VSTQIAEQIR SSILAGEFNP GEKLPPEREL AELFGVSRPS VREALNILTS
SGLVETYQGG GTLVRSLVEN SAGMPLSELI RIDGDRALDV IEVRKGMESW TAWYAATRAL
PEDVRRLQVV VDGMAKNLEQ LKASEDFDAH FHMLVARATH NVVWGHMMQS IFEAMQEFQR
DVWRAVYMTE EDQRLLFSHH LKIYEMIRDR DADGARVAML EHLDFAQKRC SAYVSMRGTE
|
|---|
| |