| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Gbem_2698 |
|---|
| Symbol | |
|---|
| ID | 6782696 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Geobacter bemidjiensis Bem |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011146 |
|---|
| Strand | + |
|---|
| Start bp | 3117181 |
|---|
| End bp | 3118068 |
|---|
| Gene Length | 888 bp |
|---|
| Protein Length | 295 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 642768691 |
|---|
| Product | polysaccharide deacetylase |
|---|
| Protein accession | YP_002139498 |
|---|
| Protein GI | 197119071 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG0726] Predicted xylanase/chitin deacetylase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 1 |
|---|
| Plasmid unclonability p-value | 0.000000289703 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGTAGGTG GCTGCTACGC CCTTTCCCGA GGAAAGGGAA CCAACGTTCG GAGGTCTTAC
AAAGAAATGA AGTGCAGAAT CCTTTTGCTG CTGCTCGCGG CCACCCTCAT GCTAACCGCA
GGCGCACACG CGGCTGGTCC CGTGATAAAG GCCACCCCTC CTGCCGCTAC CCAGGGAGTC
AACGTCCCCA TCCTGCTCTA CCACCGCTTC GGCCCGACCG TCGCCGATGG CATGACCATC
AAGACCAGCG TCTTCGAATC GCACCTGAAG TACCTCAAGG ACAACGGCTA CACGGTGATA
CCGCTCCGCA AACTGGTCGA CTACTACCTG AAAAAGGGTC CGGCACCGGC GCCCAAATCG
GTGGTCATCG TGGAAGACGA CGCGCATAAG TCGGTCTACT CCGACATGCT CCCCCTGGCG
AAAAAGTACA ACGTCCCGGT CACCGTGTTC GTCTACCCCT CCGCCATTTC CAATGCCAAG
TACGCGATGA CCTGGGACCA GTTGCGCACC CTCCAGAAGA ACGGGTTCGA CATCCAGTCG
CACACCTTCT GGCATCCCAA CTTCAGGCAT GATAAGAAGA AGATGGCTCC GGCCGAATTC
GAGAAGTCGG TGCATACACA GCTCAAGAAA TCGAAGGATC GCCTGGAATC GCAGTTGGGG
ACCAAGATCG ACATGCTGGC CTGGCCCTTC GGCATCTATG ACGATTACCT CCTGAAGAAG
GCGGCCGATG CCGGTTACAT CGCCACCTTC ACCATCGAGG CTCATCACGC CACTGCCCAG
GACAAGGTGA ACAAGCTCCC GCGCTACCTG CTGATCAACG CGGACCAGGG GAAAGCGTTC
GCTCAGATCG TGGAAGGGAA GGCTCCCAAG AGAAACCTCG TCTACTAG
|
|---|
| Protein sequence | MVGGCYALSR GKGTNVRRSY KEMKCRILLL LLAATLMLTA GAHAAGPVIK ATPPAATQGV
NVPILLYHRF GPTVADGMTI KTSVFESHLK YLKDNGYTVI PLRKLVDYYL KKGPAPAPKS
VVIVEDDAHK SVYSDMLPLA KKYNVPVTVF VYPSAISNAK YAMTWDQLRT LQKNGFDIQS
HTFWHPNFRH DKKKMAPAEF EKSVHTQLKK SKDRLESQLG TKIDMLAWPF GIYDDYLLKK
AADAGYIATF TIEAHHATAQ DKVNKLPRYL LINADQGKAF AQIVEGKAPK RNLVY
|
|---|
| |