| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Gbem_1648 |
|---|
| Symbol | |
|---|
| ID | 6781636 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Geobacter bemidjiensis Bem |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011146 |
|---|
| Strand | + |
|---|
| Start bp | 1913328 |
|---|
| End bp | 1914293 |
|---|
| Gene Length | 966 bp |
|---|
| Protein Length | 321 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 642767642 |
|---|
| Product | D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding |
|---|
| Protein accession | YP_002138462 |
|---|
| Protein GI | 197118035 |
|---|
| COG category | [C] Energy production and conversion
[H] Coenzyme transport and metabolism
[R] General function prediction only |
|---|
| COG ID | [COG1052] Lactate dehydrogenase and related dehydrogenases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.00530358 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAGATAG TGGTCCTGGA TGGATATACG CTGAACCCGG GCGACAACCC CTGGGACGAG
GTCGCCTCCT TCGGCGACCT CACGCTCTAC GACCGCACCC CTGCCGAGAT GGTGGTGGAG
CGCTCCCGCG GAGCGCAGGT GCTCCTTACC AACAAGACGG TGCTCTCGGC GGCGACCTTG
GCTGCGCTCC CGGAACTGAG GCTCGTCTGC GTGCTGGCGA CCGGCTACAA CGTGGTCGAC
CTGGAAAAGA GCGCGCAGCT GGGGATACCG GTGGTCAACG TCCCGGAGTA CGGCAGCGAC
TCGGTGGCCC AGCACGCCAT AGCCCTCCTC CTGGAACTCA CCAACCGGGT GGCGCAGTAC
CATCAGGCCG TGGCCCGCGG CGATTGGTCC GCCTCTCCCG ACTTCACCCT GGTGGGAGAG
CCTTTGACGG AACTTTGCGG CAGGAGCATC GGCATCGTGG GGCTCGGGAG GATAGGGGCG
CGGGTGGCGC GCATCGCACA GGCGCTGGGG ATGGAGGTTC TGGCTTACAA CCCGAGGCAC
CGGGTGGCCC CGGAAGGGAT CTCTTTGCGC TGGCTTAGTC TGGACCAGCT TTTCAGCCAG
GCCGACGTGG TGAGCCTGCA CTGCCCGCTC AATGATGAAA ACGAAGGGAT GGTGAACCAA
AGGACCCTGT CGCTGATGAA GCCGCAGGCG CTCCTTATCA ACACCTCCCG CGGCGGGCTC
GTCGTCGAGC GCGACCTAGC CGAGGCTTTG AACCGCGGGA GCATCGCCGG CGCCGCGGTC
GACGTCGCCG CTAGGGAGCC GATACCCGCG GACAGCCCGC TTTTGCTGGC CAAGAACTGC
ATCGTCACCC CGCATATCGC CTGGGCGACA CTTGCCGCCC GGCGCAGGCT GATGGCGGCG
ACCGCCGCCA ACATCGCCTC CTTCCTGGCG GGGAAACCGC AAAACGTGGT GAACGGGGTG
CAGTGA
|
|---|
| Protein sequence | MKIVVLDGYT LNPGDNPWDE VASFGDLTLY DRTPAEMVVE RSRGAQVLLT NKTVLSAATL
AALPELRLVC VLATGYNVVD LEKSAQLGIP VVNVPEYGSD SVAQHAIALL LELTNRVAQY
HQAVARGDWS ASPDFTLVGE PLTELCGRSI GIVGLGRIGA RVARIAQALG MEVLAYNPRH
RVAPEGISLR WLSLDQLFSQ ADVVSLHCPL NDENEGMVNQ RTLSLMKPQA LLINTSRGGL
VVERDLAEAL NRGSIAGAAV DVAAREPIPA DSPLLLAKNC IVTPHIAWAT LAARRRLMAA
TAANIASFLA GKPQNVVNGV Q
|
|---|
| |