Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Gbem_1517 |
Symbol | |
ID | 6781505 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Geobacter bemidjiensis Bem |
Kingdom | Bacteria |
Replicon accession | NC_011146 |
Strand | - |
Start bp | 1755549 |
End bp | 1757543 |
Gene Length | 1995 bp |
Protein Length | 664 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 642767511 |
Product | SSS sodium solute transporter superfamily |
Protein accession | YP_002138331 |
Protein GI | 197117904 |
COG category | [R] General function prediction only |
COG ID | [COG4147] Predicted symporter |
TIGRFAM ID | [TIGR00813] transporter, SSS family |
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Plasmid Coverage information |
Num covering plasmid clones | 1 |
Plasmid unclonability p-value | 0.000116414 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACGATGA AAAAGATATT TATTGCAGCC ACCCTGGCCC TCTCCGTTGC CGCTGCCGCC TTTGCCGAAG AGCAAAAGGC AGCCCCGGCC GCAGCCCCCG CGGTGAGCGC ACCCGCAGCT CAGGGCGCAG CCCCCGCGGT AGCAGCCCCC GCAGCCCAGG TCAACCAGTC CCAGGCGGTT GCAACGCCCG CCCCGGCCAA GCCCGCTCCG GCCAAAAGGG AGTTAAAGAC CAACAGGACC ATCACCATCG GCATGTTCAT GGTGATCATC GCCATCACCA TGGGTGTGGT AGTCTGGGCT GCCAAGCAGA CCAAGACAGC TTCCGACTTC TACGCCGCAG GCGGCGGCAT CACGGGGACC CAGAACGGCT GGGCCATCGC CGGCGACTAC ATGTCGGCAG CCTCCTTCCT GGGGATTTCC GGCCTCATCT CGCTCTACGG CTATGACGGG TTCATGTACT CGGTCGGCTG GCTGGTGGCC TACATCACGG TGCTCCTGAT CGTGGCCGAA CCGTGCCGCA ACGCGGGCAA GTACACCCTG GGGGATATCC TCTCCTTCCG TACTTCCCCG AAACCGGTGC GCGCCTTCGC CGCCCTCTCC ACCGTCGCGG TCTCCACCTT CTACCTCACC GCCCAGATGG TCGGTGCAGG CAAGCTGATG GCGCTTCTGG TCGGCATCCC CTATAAGATG TCCATCATTG GCGTCGGCAT CCTCATGGTC GGCTACGTCG TCTTCGGCGG CATGGTCGCC ACCACCTGGG TACAGATCAT CAAGGCAGGC CTCCTCATGT CGGGCGCCTT CCTGCTCTCC TTCCTGGTCA TGATCAAGGC AGGCTTCAAC CCGATCGGCT TCTTCTCCAC CATCGTCAAC AGCCCCGACA TCCAGGACCA CGTCTCCAAG CTGGTATTGA AAGACGGCGT CATCCTTGCC GGCGCGGACG CAGGACAGCG CTTCCTTGAG CCTGGCCTCT ACATGAAGAA CCCGCTGGAC CAGATCTCCC TGGGGATGGC CCTCGTGCTC GGCACCGCCG GCATGCCGCA CATCCTGATG CGCTTTTTCA CCGTCCCGAC CGCACAGGCG GCGCGTAAAT CGGTCATCAT CGCGATGTTC ATCATCGGCG GCTTCTACGT CCTGACCACC CTGCTCGGCT TCGGCGCAGC CATCCACCTC ACCCCGCAGG GGATCACCCA GGTCGACCCG GGCGGCAACA TGGCTACCCT CATGCTGGCT CAGCAGATGG GCGCCGACAT CGCACCCGTC TTCGGCGACC TCTTCCTCGC CTTCCTGTGC GCCGTCGCCT TCGCCACCAT CCTCGCCGTC GTCTCCGGCC TGGTGCTCGC GGCCTCCGCG GCCATCGCAC ACGACATCTA CGTCAACGTG ATCAAAGACG GCCACGCCGA CCAGCACGAG CAGGTCTTCG CGGCACGCGC CACCTCCTTC GTGGTAGGCG CCTGCGGCAT CATGATCGGC CTCGCGGCCG AGAAGCAGAA CGTCGCTCAC CTGGTGGCAC TCGCCTTCGC GGTCGCCGCT TCCGGCAACC TGCCGGTCGT CATCCTCTCG CTCTTCTGGA GGAAGTTCAA CACCGCCGGC GTCATCTCCG GCCTTTTGGT CGGCACCATC GCCTCCATCG CGCTGGTGAT GGTCTCCCCC AACATGACCT ACCCGAAAGT GGTGGCCGAA GGCGCCAAGA AGGTGGTCGT CGCCATGGAG AAGAAGCAGG CCGCTCTGCC GGCAGGCGAG ACCCTCTCCG AGAAAGACGC CAAGGCGCTC GCCAAGGCGA AGGTGGACGC ACAGCAGACC GGCACCTCCA TGGTCGGCCT GGAGAAGCCG CTCTTCACTC TGAAGAACCC GGGCATCGTC TCCATCCCGC TGGGCTTCAT GGCCGCCATC CTCGGTTGCC TCGCCTTCCC GAACAGGCGT TCCGAAGAGA TGTTCGACGA GGTCTACGTA CGCCAGAACA CCGGTTTGGG TATGGCCAAG GCAGTCGAAC ACTAG
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Protein sequence | MTMKKIFIAA TLALSVAAAA FAEEQKAAPA AAPAVSAPAA QGAAPAVAAP AAQVNQSQAV ATPAPAKPAP AKRELKTNRT ITIGMFMVII AITMGVVVWA AKQTKTASDF YAAGGGITGT QNGWAIAGDY MSAASFLGIS GLISLYGYDG FMYSVGWLVA YITVLLIVAE PCRNAGKYTL GDILSFRTSP KPVRAFAALS TVAVSTFYLT AQMVGAGKLM ALLVGIPYKM SIIGVGILMV GYVVFGGMVA TTWVQIIKAG LLMSGAFLLS FLVMIKAGFN PIGFFSTIVN SPDIQDHVSK LVLKDGVILA GADAGQRFLE PGLYMKNPLD QISLGMALVL GTAGMPHILM RFFTVPTAQA ARKSVIIAMF IIGGFYVLTT LLGFGAAIHL TPQGITQVDP GGNMATLMLA QQMGADIAPV FGDLFLAFLC AVAFATILAV VSGLVLAASA AIAHDIYVNV IKDGHADQHE QVFAARATSF VVGACGIMIG LAAEKQNVAH LVALAFAVAA SGNLPVVILS LFWRKFNTAG VISGLLVGTI ASIALVMVSP NMTYPKVVAE GAKKVVVAME KKQAALPAGE TLSEKDAKAL AKAKVDAQQT GTSMVGLEKP LFTLKNPGIV SIPLGFMAAI LGCLAFPNRR SEEMFDEVYV RQNTGLGMAK AVEH
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