| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Gbem_1106 |
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| Symbol | |
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| ID | 6781084 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Geobacter bemidjiensis Bem |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011146 |
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| Strand | - |
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| Start bp | 1277565 |
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| End bp | 1279382 |
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| Gene Length | 1818 bp |
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| Protein Length | 605 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 642767092 |
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| Product | TPR repeat-containing protein |
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| Protein accession | YP_002137922 |
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| Protein GI | 197117495 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3063] Tfp pilus assembly protein PilF |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.0000356395 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACGTACA CGCGCTCTAC CCAAAAGCAC CTCCTGGTGT TTCTGATTTT GGCCCTCGTG
GGCCTCGCGG CCTACGGCAA TACCTTCTCC GTCCCGTTCC AGTTCGACGA CGACGCCTAC
ATCGTTAACA ACCCCGCCAT CAAGGATTTC AACGCCTTCA TATCACCGGG CACCGTCACT
GGAGGAGCAG AGCTCTCACC GACCGCCATC CCGCCTGCAC TGCGGGTCGC TTTCATGACG
CGCATCGTGG GTTACCTTTC GCTCGCAGTC GACTACCACA TACACGGCCT GCAGGTCGCC
GGGTACCATA TCGTCAATCT TGCACTGCAT ATCATTAACG CATGGCTCGT GTACCTGGTG
CTGGGGCACC TGTTCGGGGT CAGGGGGAAG GACGAGCTCG AAGAAGGGTC CGCCGGGATA
AGGCCACTGC CACTGATCGG GGCACTACTG TTTCTTTGCC ATCCGATCCA AACCCACGCG
GTCACCTACG TCACGTCGCG CTTCGTCCTC CTGGCCTCAT TCTTCTCATT GCTCGCCTTG
ACCTCCTACC TCGGCTTTCG CGAGGCCCAC AATGGCTCCC GAGCGAAGTT CTACCTCGCC
CTTTGCGTCG TCTCCGCCTC GCTGGGCATG CTGACCAAGG AATTCACCTT CACCCTCCCC
TTCGTCATCG CGCTTTACGA GTTCTCCTTC TTCCCCGGCA CCTTTCGCGA CCATCTGCGG
AAGGTCTGGC CGGTTGCGCT TGCCGTTCCC ATCATCCCCG GTCTCATCTT CCTCCAGAAA
GGGCAACTCA CCGCCCTCGG CGGCACCATG CGCACCCTCA CCGCCGCGGA CTCGTCCGGC
ATCGGAAGGC TCGACTACCT GCTGACCCAG TTCAACGTGG TGGCAGGCTA CCTGCGCTTG
CTGCTCTTCC CTTTGGGGCA GAACGTCGAC CACGACTTCG CGGTGCAGCA CAACCTTGCC
GCTCCAGCCG TCCTCCTCCC GCTTTTGCTG CTGCTATGCC TGTTCGGCTG GGCTGCCGTC
GGGTACGTCC GTTCCCTGCG CGCCGGGGAC GCCGCAGCGA GGGTGATCCC TTTCGGCATC
CTCTGGTTTT TCATGACCTT ATCGGTCGAG TCAAGCATCA TCCCTCTCGG AGAGTTGTCC
GCGGAGTACC GGCTTTACCT CCCCTCCCTT GGGGTAATCA TCGTGCTGTG TTGGCTCGCT
GACCGGGCAT GCCTGCGTCT GTCGGCGGGA AGAAGGGCTC GGTTCGCGGC TGCCCTTGTC
GTCATCGGGA TGCTCGGTAC GCTGACCATC CTGCGCAACA GCGTGTGGCA AAGCGAAATT
TCATTGTGGC GGGACGCGGT GAAAAAGAGT CCGGCGAAGC TGAGGCCCCA TCAAAACCTG
GCGCTCTATT ACGGGAAGGC AGGACGGTTG GAAGAAGCGA GACAGGAACT GCAGCAGGCG
ATCGCCATCA AACCGGACGA CTTCGAACTG CACAACAACC TGGGCATCGT CTATCGGCAA
CAGGGGAACC TCGATGCCGC GATCCTGGAG TACGAGCGCG CCCTGCAGCT CGAACCCGCC
GATGCGATGG CGCGCTACAA CCTTGGCAAC GCCTACCTGG GACGGGGAAG GTACCAGGAG
GCGCTTGAAC AGTACCAGTC ATGCCTCAAA CTGATCCCGG ATTACGACGA TCTCCACAAC
AACATGGGCA TCGTCTACAA CAAAGCCGGA CAAAGCGACG CCGCGATCAA GGAGTTCCAG
GAGGCCCTGC GCCTCAATCC GGCAAACGCA CATGCCAGGA GGAACCTGGA AAGCAGCATG
AACCGGGCGA CGAGGTGA
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| Protein sequence | MTYTRSTQKH LLVFLILALV GLAAYGNTFS VPFQFDDDAY IVNNPAIKDF NAFISPGTVT
GGAELSPTAI PPALRVAFMT RIVGYLSLAV DYHIHGLQVA GYHIVNLALH IINAWLVYLV
LGHLFGVRGK DELEEGSAGI RPLPLIGALL FLCHPIQTHA VTYVTSRFVL LASFFSLLAL
TSYLGFREAH NGSRAKFYLA LCVVSASLGM LTKEFTFTLP FVIALYEFSF FPGTFRDHLR
KVWPVALAVP IIPGLIFLQK GQLTALGGTM RTLTAADSSG IGRLDYLLTQ FNVVAGYLRL
LLFPLGQNVD HDFAVQHNLA APAVLLPLLL LLCLFGWAAV GYVRSLRAGD AAARVIPFGI
LWFFMTLSVE SSIIPLGELS AEYRLYLPSL GVIIVLCWLA DRACLRLSAG RRARFAAALV
VIGMLGTLTI LRNSVWQSEI SLWRDAVKKS PAKLRPHQNL ALYYGKAGRL EEARQELQQA
IAIKPDDFEL HNNLGIVYRQ QGNLDAAILE YERALQLEPA DAMARYNLGN AYLGRGRYQE
ALEQYQSCLK LIPDYDDLHN NMGIVYNKAG QSDAAIKEFQ EALRLNPANA HARRNLESSM
NRATR
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