Gene Gbem_0602 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagGbem_0602 
Symbol 
ID6783435 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameGeobacter bemidjiensis Bem 
KingdomBacteria 
Replicon accessionNC_011146 
Strand
Start bp722304 
End bp724241 
Gene Length1938 bp 
Protein Length645 aa 
Translation table11 
GC content63% 
IMG OID642766575 
ProductTetratricopeptide TPR_2 repeat protein 
Protein accessionYP_002137426 
Protein GI197116999 
COG category[R] General function prediction only 
COG ID[COG4783] Putative Zn-dependent protease, contains TPR repeats 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00000607684 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAAAGAT ATGCAGCGCT ATCCTCGCTT CTTGCGGTGA CCCTGTTCTC CACCGGGTTC 
AACTGGCCGT TTCCTTCGGG CAACGCCTGC CGCGACGCCA AGCGCATCAT CATGGAGCTC
TCCCCGCAAG CGGGCGAGCA GAAGAGGAAG GAAGCCGAGA AACGGGTGGC GGAACTCTGC
CCGACCGGGC CTGCCGGACA CTACCTGAAG GGGCTCACCT TCGAGAGAAG CGGCAATGTC
GACGCCGCCA TAAGCGAGTA CCGCGAGACC CTCTCCCTCG ACCCCGAATT CTATCCCGCC
AGCGGGAACC TGGGCCTTTT GCACCTGCAG AAGGGAGCCG GCGAGGAAGC TGCCGTGGAG
CTTGCCGCGG GGCTTAAGGC CGGCGACCCC CGCTACCACG CAGGGCTTGC CCGGGTCATG
GCGGACAAGC AGATGCACCT GCTCGCCATC TTCCACTACA ACGAGGCGAT TGCCGCCTTC
CCCGACGACG CGGCGCTTTA CACGGGCATC GCTGCATCCT ACAACGCTGC GGGGCAGAAG
CAGAAGGCCG AGGACGCCTA CCGCAGGGCC CTGGTCTTGC AGCCCGACAA CGCGCAGGCC
CGCTTTGGCC TTGGCGCCCT TCTCTTGGAG CGTGGCGAGG CCGACAAGGC GGTCAGCGAG
TTGAAGCTCG CGGCGATCGC CCAGCCGGCC AACAAGGAGA CACACCGGCT CTTAGCCGAG
GCATACGCCC GCAAGGGTGA CGCGAAGAGC GCCGACTACG AGCGGGGGCT CGCCGGCATC
GGCTCGAAGC CGAAGGAACT TCCCAAGGTC GACCACATGG CGCTGGCTGA AAAGCACCGC
CTGGCCAAAG AATACGAGAT GGCCATCAGC GAGTACCGGC TGCGGCTGGC CGATGAGCCC
GACGACGCGG TGGCCCAGCA GCGCCTGGGC GACACCCTGC TCGCGGTGGG ACGCGAGGAT
GAAGCGATGT CGTACTACCG CGACGCGCTG AGAAACAAGG CGGAGAACCC CGAGCTCCAT
TTCAACCTGG CCGGGATCTA TGAGCGCAAG GCGCTCTTGG ACGAGGCGGT GGTCGAGTAC
CGCCAGGTAC TGGCATCGAG CCCCGACAAC CAGCAGGCGC GGCAGCGCCT GGCCGACATC
TACACGCTGC GCGGCAGCTT CAACCAGGCC CTCGAACAGT ACCAGGCGCT CATCAAGACA
AACCCCGCCG ACCCGGCGCT GCGGCTGAAG CTTGCGCGCG CCTACGTCAA CAGCAAAGAG
CTTGACGCCG CGGCCGAGGC CTACCATGCA GCCATCAAGC TGGACGGCGA GTCGGTGGAC
GCCCACCGCG AGCTCGCCAA CCTGCAGAGA AAAAGAAACA TGATCGACGA GGCGGCCGCC
GAATACCAGG AAGTGCTCAG GCTGAAAAAG GACGACCAGG AAGTCCGCAC CGCCCTCACC
GCCATCTACG TCAAGAACAA GAACTACGAT GCCCTGGCCA AGCTCCTGAA GGACGGAGTG
GATCTCTCAC CCAGCGACCC GAACGCGCAC TACAAGCTAG GCCTGGTCTA CGAATTCCAG
AAGGATTACG ACGCGGCCAC CGCCCAATAC AAGGAAGCGG TGACCCTGAA GCCCGACCAC
GCCAAGGCCC TGAACGCCAT GGGACGGGTC CAGATGAAGG ACGGCCACAT CGCCGAGGCA
AAGGAGTCGC TCGAAGCGGC GAGGAAGGCG GACCCCGAAC TGGAAGAAGC CCAGGTCCTT
TTGAGCAACA TCAAGGACGA GTTCAACCCC GAGCCCAGGA GCTACCGCAA GCACAAGTCC
TCCAACGGGA GCAAGGCCAA GAAAGGGAAG AAGGGTAAAA AAGGGAAGGA AGCGAAGAAA
TCCAAGAAGG ACAGCGACGA CAAGCCCGCC AAGAAATCCA AAAAGAAAAA GTCCAAGAAA
AAGAGCAAGG AAGATTAA
 
Protein sequence
MKRYAALSSL LAVTLFSTGF NWPFPSGNAC RDAKRIIMEL SPQAGEQKRK EAEKRVAELC 
PTGPAGHYLK GLTFERSGNV DAAISEYRET LSLDPEFYPA SGNLGLLHLQ KGAGEEAAVE
LAAGLKAGDP RYHAGLARVM ADKQMHLLAI FHYNEAIAAF PDDAALYTGI AASYNAAGQK
QKAEDAYRRA LVLQPDNAQA RFGLGALLLE RGEADKAVSE LKLAAIAQPA NKETHRLLAE
AYARKGDAKS ADYERGLAGI GSKPKELPKV DHMALAEKHR LAKEYEMAIS EYRLRLADEP
DDAVAQQRLG DTLLAVGRED EAMSYYRDAL RNKAENPELH FNLAGIYERK ALLDEAVVEY
RQVLASSPDN QQARQRLADI YTLRGSFNQA LEQYQALIKT NPADPALRLK LARAYVNSKE
LDAAAEAYHA AIKLDGESVD AHRELANLQR KRNMIDEAAA EYQEVLRLKK DDQEVRTALT
AIYVKNKNYD ALAKLLKDGV DLSPSDPNAH YKLGLVYEFQ KDYDAATAQY KEAVTLKPDH
AKALNAMGRV QMKDGHIAEA KESLEAARKA DPELEEAQVL LSNIKDEFNP EPRSYRKHKS
SNGSKAKKGK KGKKGKEAKK SKKDSDDKPA KKSKKKKSKK KSKED