Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Gbem_0595 |
Symbol | |
ID | 6783428 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Geobacter bemidjiensis Bem |
Kingdom | Bacteria |
Replicon accession | NC_011146 |
Strand | - |
Start bp | 713793 |
End bp | 715685 |
Gene Length | 1893 bp |
Protein Length | 630 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 642766568 |
Product | general secretion pathway protein D |
Protein accession | YP_002137419 |
Protein GI | 197116992 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG1450] Type II secretory pathway, component PulD |
TIGRFAM ID | [TIGR02517] general secretion pathway protein D |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.788546 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCTCATGT TCCTGCTCGC CGCACCGCCC CTGGTGTTCG CCAAGGGTGT AGTGCTGAAC TTCACCGACG TGGATATCGC CACTATGGTG AAATTTGTCA GCGACCTGAC CGGGAAGAAC TTCATCATGG ACGACAGGGT GAAGGGAAAG ATCTCGGTGT TCTCCCCGGC GAAGCTCTCC AACGAGGAGG CGTACAACGT CTTCACCTCG GTCCTGGAAC TCAAGGGGTT CACCGTGGTA CCGGCGGGAA AGGTGCTGAA GATAGTCCCC ACGTCCAGCG CCAGGCAGTC GGGGATGAGG ATCCTCTCCG ACGGTGAACG CTCCGTCGTG AACGACAGCT ACCAAGCCAG GGTGATCCAG CTGGAGCACG TCGCCCCACA GGACGCGGTG ACCTTCCTGC AGCCGCTGGT CTCCAAGGAC GGCCAGATCT CCGCCTTCGG CGCGGCGAAC ATGATCCTCG TGGTCGACTC AGCATTCAAC ATCCAGAAGG TGCTGGGGAT CCTCAAGCAC ATCGACACGG ATCAGGTGCG CGAGGGTGCC GAACTCGTTT TCCTCAAAAA CGCGGCCGCC GAGAGCGTGG CGACGCTGGT CAAGGACTGG ATGAGCGGCA AGTCCTCCAA AGGGGGAGCC CCCGGCGCGG CTGCCACCAA CACCGCATCC TCGACCGTAG TGCCCGACAA CAGGCTGAAC GCTCTGATCA TCTTCGGCAG CGACAAGGAC AAGACGGACG TGAAGAAGCT GATCGCGCTG GTCGACGTGG TCCCCCCCAC CACCAGCAGC AAGGTCAACG TCTACTACCT GGAAAACGCC GAGGCCGCCG AGGTCGCCAA GGTGCTGGAT GGCCTCCTCA AAGGTACGGC GGCCACGCCG GCGCCCGCTG CGGGCGCTGC CGCGACGGCG CCGCAACAGG CCATCTTCGA GGGTGGGAAG ATCACCATCA CCCCCGACAA GTCGACCAAC TCGCTGGTCA TCATGGCCTC CCCCACCGAC TACCAGAACC TCTTGCAGGT GATCCAGAAG CTGGACCGCC GCAGCCGCCA GGTCTTCGTA CAGGCGATGA TCGCCGAGGT TTCCGCCAAC AAGGCGAAGG AACTCGGCCT GCAATGGGGG GTGGTCACCG GAGCTTCCAA CGGCACGCTC TCTACCGTCG GAACCTTCGA TCCCTTCGGT GCCGTAGCCG GGTTGACCGG CACCCTGACC CTCGCCGGAC AGCTGGGCAT CACGCCACCG GACGCCGGCG TGGCCTTGTT CCCCGCAACG CTCAAGGCGC TGCAGAGTAA CGGCGCGCTG AACGTCCTGT CCACGCCCAA CATCATGACC AGCGACAATA AGGAAGCCGA GATCTTCGTG GGCGAGAACG TCCCCTTCCT CTCCGGCACC AACCTCACCT CCACCGGCCT CTCGCAGCAG TCGATCGAGA GGAAAGACAC CGGTATCATC CTGAAGATCA AGCCCCAGAT CAGCGAGGGC GAGTACATAA AGCTCGACAT CTACCAGGAA ATCTCCGCGG TGAAGGATTT CGGCACCGCC ACCAACCCCA ACCTCGGAAG CACCAAGCGC TCGGCCAAGA CCTCCGTGGT GGTGAAGAAC ACCGACACGG TCATCATCGG CGGACTGATT CAGGACACGG ACCAGGTTAC GGAAAGCAAG ATCCCGCTTC TGGGCGACAT CCCGCTCCTG GGATGGCTTT TCAAGACCAA GAAGACCACC CGGGACAAGA CCAACCTGCT GATCATGCTC ACCCCGCGCA TAATCAAGGA CGCGCGCGAC ATGGCCGAGG TTTCCGTCAA CCAGAGAAAC GCCTTCAGCG ACGCGGTGAA GACCAGCGAG CCGATCAACC TGGAGCAGGC CCTCAAGGAA AAGCCCAAGT CGGTGACCGA GGACAAGCCC TAA
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Protein sequence | MLMFLLAAPP LVFAKGVVLN FTDVDIATMV KFVSDLTGKN FIMDDRVKGK ISVFSPAKLS NEEAYNVFTS VLELKGFTVV PAGKVLKIVP TSSARQSGMR ILSDGERSVV NDSYQARVIQ LEHVAPQDAV TFLQPLVSKD GQISAFGAAN MILVVDSAFN IQKVLGILKH IDTDQVREGA ELVFLKNAAA ESVATLVKDW MSGKSSKGGA PGAAATNTAS STVVPDNRLN ALIIFGSDKD KTDVKKLIAL VDVVPPTTSS KVNVYYLENA EAAEVAKVLD GLLKGTAATP APAAGAAATA PQQAIFEGGK ITITPDKSTN SLVIMASPTD YQNLLQVIQK LDRRSRQVFV QAMIAEVSAN KAKELGLQWG VVTGASNGTL STVGTFDPFG AVAGLTGTLT LAGQLGITPP DAGVALFPAT LKALQSNGAL NVLSTPNIMT SDNKEAEIFV GENVPFLSGT NLTSTGLSQQ SIERKDTGII LKIKPQISEG EYIKLDIYQE ISAVKDFGTA TNPNLGSTKR SAKTSVVVKN TDTVIIGGLI QDTDQVTESK IPLLGDIPLL GWLFKTKKTT RDKTNLLIML TPRIIKDARD MAEVSVNQRN AFSDAVKTSE PINLEQALKE KPKSVTEDKP
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