Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Gbem_0503 |
Symbol | secD |
ID | 6783332 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Geobacter bemidjiensis Bem |
Kingdom | Bacteria |
Replicon accession | NC_011146 |
Strand | + |
Start bp | 609686 |
End bp | 611290 |
Gene Length | 1605 bp |
Protein Length | 534 aa |
Translation table | 11 |
GC content | 50% |
IMG OID | 642766473 |
Product | preprotein translocase subunit SecD |
Protein accession | YP_002137328 |
Protein GI | 197116901 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG0342] Preprotein translocase subunit SecD |
TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family [TIGR01129] protein-export membrane protein SecD |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.153104 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGCCAAAGA GCATTTCATG GCGCATAACC ATGATTGTAT TTTTTGTACT CTTATCGTTT CTATACCTCA CGCCTACTCT GGTTTCCAAC TTGCCTAACT GGTGGACAGG GTATTTCCCC AAAGACAAAA TCCATCTGGG GCTTGACCTT CAGGGCGGCA CCCACCTTGT AATGAAAGTG GATACGCAAA AAGCAGTTGA GGGTTATATC GATTTGATTG CCTCGGATCT CGAAGATTCA CTCAATGTCC GTCGCATCCG CATTCATCAG ATTAACCGGG TTGGTGAAGA TGCCATACGA CTGGCATTCT ACGACGTGAA TAGTGCGGAA AACGAGGCAC AACTTATAAA GAAAAAATAT CCAGAACTAG AGCAGATACA AATACGTGAT TCTGAGGGTG GGATGGTACA CCTCGAATTC CGAATGGAAA AGAAGGCCGT GCAGGATAGG AAGGACAAGG CTGTTGCCCA GGCTCTTGAA ACTATCCGCA ACCGAATCGA TCAGTTCGGG GTATTGGAGC CGGTAATACA GAGAGAAGGA ATAGATCATA TAGTGATCCA ACTTCCAGGC ATCACTGATC CCAAACGAGC TATTGAGTTG ATCGGAAAAA CTGCGCGCCT TGAATTCAAG CTCGTGGACG AAAATCTCAG CGCATCGTCC TCCTCTCCCT ATGCTATGCC GGACGATGCA GAGATTCTGA TGGAGCAGCA ATCGAATTCA GCCACCGGAG CTGTTCAGGG AGTGCCTATT GTAGTGAAGA AAAAGGCCAT CATCACCGGC GATCTCCTCA CCGACGCTCA AGTGAAGATT GATTCACAAA ATAACGAACC ATATGTGGCA ATTGATTTCA ATTCCACCGG TGCCAGGCTC TTCGACCAGG TGACTGCTGC TAATGTAGGG AAACGCTTTG CTATTGTCCT TGATGGCAAT GTGTACTCGG CACCGGTTAT TCGGGAACGG ATCTCCGGCG GCTCAGCGCA GATCTCCGGC AACTTCAACG AAAAGGAGGC TGCTGATCTG GCTATTGTCC TACGCGCGGG ATCGCTTCCC GCCCCGGTGA AGATTGTGCA GAACGTCACG GTCGGTCCGT CGATAGGCGA GGATTCCATC TCCAAAGGGT TGATGGCTGG TGGAATAGGC ATCCTTCTGG TTGTGCTTTT CATGGTGTTT TACTACCGGA TGGCAGGACT GGTGGCAAAT TTCGGCATGG TGCTCAACGT GTTGTTTCTC CTGGGAGCGC TGGCGGCTCT CGGTGCCACG CTGACCTTGC CCGGTATCGC GGCCATCGTT CTTTTGGTCG GCATGTCGGT TGACTCGAAC GTGCTTATCT TTGAGCGGGT CAAAGAGGAA ATCAGGCTTG GCTGTACCCC AAAGATGAGT ATCGATGCTG GATATGACAA GGCCTTCCTG ACCGTCATGG ACTCTCATGT TACCACCCTG ATCACAGCGG CTGTCCTATT CCAGTTTGGG ACAGGACCGG TCAAGGGATT CGCGGTCTCA CTGAGCCTTG GCGTTATCAT CAACCTTTTT ACCACGCTTG TCACAACCAA GGTGGTCTTT GACAGCGCCT TCAGCCGCTT TCAGATCAGA CGGCTCAGCA TATAG
|
Protein sequence | MPKSISWRIT MIVFFVLLSF LYLTPTLVSN LPNWWTGYFP KDKIHLGLDL QGGTHLVMKV DTQKAVEGYI DLIASDLEDS LNVRRIRIHQ INRVGEDAIR LAFYDVNSAE NEAQLIKKKY PELEQIQIRD SEGGMVHLEF RMEKKAVQDR KDKAVAQALE TIRNRIDQFG VLEPVIQREG IDHIVIQLPG ITDPKRAIEL IGKTARLEFK LVDENLSASS SSPYAMPDDA EILMEQQSNS ATGAVQGVPI VVKKKAIITG DLLTDAQVKI DSQNNEPYVA IDFNSTGARL FDQVTAANVG KRFAIVLDGN VYSAPVIRER ISGGSAQISG NFNEKEAADL AIVLRAGSLP APVKIVQNVT VGPSIGEDSI SKGLMAGGIG ILLVVLFMVF YYRMAGLVAN FGMVLNVLFL LGALAALGAT LTLPGIAAIV LLVGMSVDSN VLIFERVKEE IRLGCTPKMS IDAGYDKAFL TVMDSHVTTL ITAAVLFQFG TGPVKGFAVS LSLGVIINLF TTLVTTKVVF DSAFSRFQIR RLSI
|
| |