Gene Gbem_0503 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagGbem_0503 
SymbolsecD 
ID6783332 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameGeobacter bemidjiensis Bem 
KingdomBacteria 
Replicon accessionNC_011146 
Strand
Start bp609686 
End bp611290 
Gene Length1605 bp 
Protein Length534 aa 
Translation table11 
GC content50% 
IMG OID642766473 
Productpreprotein translocase subunit SecD 
Protein accessionYP_002137328 
Protein GI197116901 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG0342] Preprotein translocase subunit SecD 
TIGRFAM ID[TIGR00916] protein-export membrane protein, SecD/SecF family
[TIGR01129] protein-export membrane protein SecD 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.153104 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCCAAAGA GCATTTCATG GCGCATAACC ATGATTGTAT TTTTTGTACT CTTATCGTTT 
CTATACCTCA CGCCTACTCT GGTTTCCAAC TTGCCTAACT GGTGGACAGG GTATTTCCCC
AAAGACAAAA TCCATCTGGG GCTTGACCTT CAGGGCGGCA CCCACCTTGT AATGAAAGTG
GATACGCAAA AAGCAGTTGA GGGTTATATC GATTTGATTG CCTCGGATCT CGAAGATTCA
CTCAATGTCC GTCGCATCCG CATTCATCAG ATTAACCGGG TTGGTGAAGA TGCCATACGA
CTGGCATTCT ACGACGTGAA TAGTGCGGAA AACGAGGCAC AACTTATAAA GAAAAAATAT
CCAGAACTAG AGCAGATACA AATACGTGAT TCTGAGGGTG GGATGGTACA CCTCGAATTC
CGAATGGAAA AGAAGGCCGT GCAGGATAGG AAGGACAAGG CTGTTGCCCA GGCTCTTGAA
ACTATCCGCA ACCGAATCGA TCAGTTCGGG GTATTGGAGC CGGTAATACA GAGAGAAGGA
ATAGATCATA TAGTGATCCA ACTTCCAGGC ATCACTGATC CCAAACGAGC TATTGAGTTG
ATCGGAAAAA CTGCGCGCCT TGAATTCAAG CTCGTGGACG AAAATCTCAG CGCATCGTCC
TCCTCTCCCT ATGCTATGCC GGACGATGCA GAGATTCTGA TGGAGCAGCA ATCGAATTCA
GCCACCGGAG CTGTTCAGGG AGTGCCTATT GTAGTGAAGA AAAAGGCCAT CATCACCGGC
GATCTCCTCA CCGACGCTCA AGTGAAGATT GATTCACAAA ATAACGAACC ATATGTGGCA
ATTGATTTCA ATTCCACCGG TGCCAGGCTC TTCGACCAGG TGACTGCTGC TAATGTAGGG
AAACGCTTTG CTATTGTCCT TGATGGCAAT GTGTACTCGG CACCGGTTAT TCGGGAACGG
ATCTCCGGCG GCTCAGCGCA GATCTCCGGC AACTTCAACG AAAAGGAGGC TGCTGATCTG
GCTATTGTCC TACGCGCGGG ATCGCTTCCC GCCCCGGTGA AGATTGTGCA GAACGTCACG
GTCGGTCCGT CGATAGGCGA GGATTCCATC TCCAAAGGGT TGATGGCTGG TGGAATAGGC
ATCCTTCTGG TTGTGCTTTT CATGGTGTTT TACTACCGGA TGGCAGGACT GGTGGCAAAT
TTCGGCATGG TGCTCAACGT GTTGTTTCTC CTGGGAGCGC TGGCGGCTCT CGGTGCCACG
CTGACCTTGC CCGGTATCGC GGCCATCGTT CTTTTGGTCG GCATGTCGGT TGACTCGAAC
GTGCTTATCT TTGAGCGGGT CAAAGAGGAA ATCAGGCTTG GCTGTACCCC AAAGATGAGT
ATCGATGCTG GATATGACAA GGCCTTCCTG ACCGTCATGG ACTCTCATGT TACCACCCTG
ATCACAGCGG CTGTCCTATT CCAGTTTGGG ACAGGACCGG TCAAGGGATT CGCGGTCTCA
CTGAGCCTTG GCGTTATCAT CAACCTTTTT ACCACGCTTG TCACAACCAA GGTGGTCTTT
GACAGCGCCT TCAGCCGCTT TCAGATCAGA CGGCTCAGCA TATAG
 
Protein sequence
MPKSISWRIT MIVFFVLLSF LYLTPTLVSN LPNWWTGYFP KDKIHLGLDL QGGTHLVMKV 
DTQKAVEGYI DLIASDLEDS LNVRRIRIHQ INRVGEDAIR LAFYDVNSAE NEAQLIKKKY
PELEQIQIRD SEGGMVHLEF RMEKKAVQDR KDKAVAQALE TIRNRIDQFG VLEPVIQREG
IDHIVIQLPG ITDPKRAIEL IGKTARLEFK LVDENLSASS SSPYAMPDDA EILMEQQSNS
ATGAVQGVPI VVKKKAIITG DLLTDAQVKI DSQNNEPYVA IDFNSTGARL FDQVTAANVG
KRFAIVLDGN VYSAPVIRER ISGGSAQISG NFNEKEAADL AIVLRAGSLP APVKIVQNVT
VGPSIGEDSI SKGLMAGGIG ILLVVLFMVF YYRMAGLVAN FGMVLNVLFL LGALAALGAT
LTLPGIAAIV LLVGMSVDSN VLIFERVKEE IRLGCTPKMS IDAGYDKAFL TVMDSHVTTL
ITAAVLFQFG TGPVKGFAVS LSLGVIINLF TTLVTTKVVF DSAFSRFQIR RLSI