| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Gbem_0358 |
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| Symbol | dapF |
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| ID | 6783184 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Geobacter bemidjiensis Bem |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011146 |
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| Strand | - |
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| Start bp | 437484 |
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| End bp | 438320 |
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| Gene Length | 837 bp |
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| Protein Length | 278 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 642766327 |
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| Product | diaminopimelate epimerase |
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| Protein accession | YP_002137185 |
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| Protein GI | 197116758 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0253] Diaminopimelate epimerase |
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| TIGRFAM ID | [TIGR00652] diaminopimelate epimerase |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.00000380809 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAATTCA CAAAGATGCA GGGTGCAGGC AACGACTACG TGTATGTCAA CTGTTTCGAA
GAGGCGGTGC ATGACCCTGC CGCGGTGGCG ATAAAGGTCT CCAACCGCAA CTTCGGCATC
GGATCGGACG GGCTGATCCT GATCATGCCG AGCGAAGTGG CCGACGTAAG GATGCGGATG
TTCAACTCGG ATGGATCAGA AAGCGAGATG TGCGGCAACG GCATCCGCTG CGTGGCGAAA
TATGCCTACG ACCACGGAAT CGTGACGAAA AATGAGATAA CTGCGGAAAC CGGCGCCGGG
ATCCTGACCC TGCAGCTTTT CACCGACGCC GGTTGCAAGG TGGAAAAGGT GCGGGTGAAC
ATGGGGCCGC CGAGGCTGAC CAGGAAGGAA ATCCCCATGC TGGGGGAACC GGAGGAGCGG
GTGGTCAACG TGCCGCTCAA CGTGCTCCAC TCCAGCTTCA ACATCACCTG CGCCTCCATG
GGGAACCCCC ACTGCGTCAT CTTCGTGGAT GACGTGGACA CGTTCCAGGT CGAGAAGTAC
GGTCCGCTGA TCGAGAATCA CGAGCTGTTC CCGCGCCGCA CCAACGTGGA ATTCGTTCAG
ATCGTCTCCC GCACCGAGGT GCGCCAGCGC ACCTGGGAGC GCGGCGCCGG CGAAACGCTT
GCCTGCGGCA CCGGTTCCAG CGCAGTCACC GCCGCCTGCG TCCTGAACGG GCTGACAGAG
AAGCGCATCT TGAACCACTT GACCGGCGGC GATCTCGAGA TGGAGTGGGG GGAGGACGGC
AACATCTACA TGACCGGCCC GGCGGTTGAA GTGTTTACCG GAGAAATCGA CTTATGA
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| Protein sequence | MKFTKMQGAG NDYVYVNCFE EAVHDPAAVA IKVSNRNFGI GSDGLILIMP SEVADVRMRM
FNSDGSESEM CGNGIRCVAK YAYDHGIVTK NEITAETGAG ILTLQLFTDA GCKVEKVRVN
MGPPRLTRKE IPMLGEPEER VVNVPLNVLH SSFNITCASM GNPHCVIFVD DVDTFQVEKY
GPLIENHELF PRRTNVEFVQ IVSRTEVRQR TWERGAGETL ACGTGSSAVT AACVLNGLTE
KRILNHLTGG DLEMEWGEDG NIYMTGPAVE VFTGEIDL
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