Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Gbem_0128 |
Symbol | |
ID | 6782950 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Geobacter bemidjiensis Bem |
Kingdom | Bacteria |
Replicon accession | NC_011146 |
Strand | - |
Start bp | 152612 |
End bp | 155227 |
Gene Length | 2616 bp |
Protein Length | 871 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 642766094 |
Product | DNA ligase D |
Protein accession | YP_002136955 |
Protein GI | 197116528 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG1793] ATP-dependent DNA ligase [COG3285] Predicted eukaryotic-type DNA primase |
TIGRFAM ID | [TIGR02776] DNA ligase D [TIGR02777] DNA ligase D, 3'-phosphoesterase domain [TIGR02778] DNA polymerase LigD, polymerase domain [TIGR02779] DNA polymerase LigD, ligase domain |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGGACTGG AAGAGTATCA GCGCAAAAGG AATCCGGGGA GGACGCCGGA GCCGCCGGCC AGCGAGGGGA AGTCGGAGAG ATCTTTACGG TTCGTGGTGC ATAAGCACGC GGCCTCTCAT CTGCATTACG ACTTTAGGCT CGAGCTCGAC GGAGTTCTGA AAAGCTGGGC CATCCCCAAG GGCCCCTCGC TGGATCCCTC GGTAAAAAGG CTCGCCATGA TGGTGGAGGA CCACCCCTAC GACTACGGCG ACTTCGAGGG GGTGATTCCC AAGGGGAATT ACGGGGCAGG CGAGGTGATC GTCTGGGACA CCGGGAGCTA TGAGGCCCCG GGGGCGGCCG ATCCGGAACA GGGCGTGAGG CTGCTGCGCG AGGGGCTGAA AAAGGGAGAC CTGAAATTCA TCCTCGTCGG CCGGAAATTG AACGGGGAAT ATGCCCTAGT TCGCATCAAG GGGGACAAGG AGAACACCTG GCTTTTGATC AAGAAAAACG ACCGGTTCGC CTCGACCGAG GACGTGACGT TGCAGGACCG TTCGGTGGTC AGTGACGTCA CCATCGAGGA GCTAAAGACG GGGAGGAAGC CACAGGCGTT GCCCCTAGCC GCCGCAGAGG CGGCGGAACC AGTCGGACCT GTCAGACCTG CCGCTCCGAT GCCGCACCGA CTCACTCCGA TGCTGGCCAA CTCCGCGGCC GAGCCCTTCG ACGATCCCGA CTGGCTCTTC GAGATAAAAC TCGACGGCTA CCGCGCCATC GCCGAGATAG AGGGCGGCGA GGTGCAGCTC TACTCGCGCA ACAACCTCTC CTTCAACAAG CGCTTCCCCG CCATCGTCCA GTCACTTGCT TCCCTGCCGG TCACGGCAGT GCTGGACGGT GAGGTGGTAG CCCTCGACGC CAAGGGGAGG TCTTCCTTCC AGCTCTTGCA GAACAGCCTG CGCACCGGGG AGAAGAACAT CTACTACTAC GCCTTCGACC TCCTCTACCT CGACGGCGAG GACCTGCGCG CCGAACCGCT CCAGGCACGC AAGGAGAGGC TTCGCAACCT GCTCCCCGAA CTCCCCTGGG TCCGCTTCAG CGACCATATC AGGGAGTACG GCAGGCAGTT CTTCGAGCTT GCCCGCGAGA ACAACCTGGA GGGAATCCTC GCCAAAAGGG CCGACAGCCG GTATTTTGCG GGAAGAAGAA GCGGCGACTG GCTGAAGATT AAGATACGGC TGCAGCAGGA GGCGGTGATC TGCGGGTTCA CCCAGCCCCG AGGGAGCAGG AAAGGATTGG GCTCTCTCGT GCTGGGGGTC TACGAAAATG GCGAGCTGGT CTACATCGGG CTTACCGGAG GGGGGTTCGA CGATGTGGGG TTGAAGGAGA TGTACGCTGC GCTGCAACCG CTGATCCAGC CGGAGTCCCC TTTCCGGCAG CAGGTGAAGA CCAGCATGCC GGTTACCTGG ACCAAACCAG TGCTGGTCTG CGAGGTCGAA TTCGCCGAGT GGACCGACGA GAACGTCATG CGCCTGCCCA TTTTCCTGGG GCTTCGTGAG GACAAGGACC CCAGGTCCGT GCAGCGGGAG ATCTTTCCCG CGGAGGTCCA GCCCCCGGTG CACCATGCGC AGACGGATCA AGAGGAGGAT GTTGGCGAGC CTGCGGCAGG GGAAAAGGTG CCTGCAGAGG AGACGGTTGC CACAGCCAAG CCTTTCGTGA AGAAGGGGGG CGCGAAGAAA GGGGAGGTAA ACCTCGTCAT CGACGGGCAG CGGCTCACCC TGACCAACCT GGACAAGGTC TTCTGGCCGG AGGAGGGATA TACCAAGGGG GACGTCATCG ACTACTACCG CAAGATGGCA CGGGTGATAC TCCCGTACCT CATGGACCGC CCGGAGTCGA TGTACCGTAC GCCGCACGGC ATCGCCGAAG GAGGTTTCTA CCAGAAGGAG ACGGCCGACC TGATCCCCCC CTGGATCACC GCCCGGGAGA TCTATTCCAA ACACGTCGAC AAGAACATCA AGTTCCTCGT CTGCCAGGAC GAGGCGACGC TCATCTACAT GGCCAACCTG GGCTGCATCG AGATCAACCC ATGGCTGTCG CGGCTGCAGC AGCTCGACTA CCCCGATTAC CTGGTGATCG ACCTGGACCC CGAGGACATC TCCTTCGAGA AGGTGATCGA GACCGCGCTC GCCGTGCACG AAGTCCTGGA AAGCGCGGGC GCGGCCAGTT TCCCGAAGAC CTCCGGCGCC ACCGGCATCC ACATCTACGT CCCGCTGGGA GCACGCTACG ACTACGACAC GGCAGGGGTA TTCGCGAAGC TGGTGGCGAC CCTCGCGCAC CACAAGGTCC CCGGCTTCAC CAGCCTCTTG CGCAGCCCCA GGCAGCGCCA GAAAAAGGTG TACCTCGACT TCCTGCAGAA CAAGCCGGGC CAGACCCTCG CCGCCCCCTA CAGCATCCGC CCCCGCCCCG GGGCGACCGT TTCGGCGCCG CTTCGCTGGG AGGAAGTGAA GCCGGGTCTC GACCCGCGCC AGTTCACCAT CAACACCATC GGGAAGCGGC TGGAGCAGGT CGGCGACCTG TTCCAAGGCG TCCTCGGTCC CGGTATCGAC ATGGAGCGCT GCCTGGAGCG GCTGCAAAAC GGGTAG
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Protein sequence | MGLEEYQRKR NPGRTPEPPA SEGKSERSLR FVVHKHAASH LHYDFRLELD GVLKSWAIPK GPSLDPSVKR LAMMVEDHPY DYGDFEGVIP KGNYGAGEVI VWDTGSYEAP GAADPEQGVR LLREGLKKGD LKFILVGRKL NGEYALVRIK GDKENTWLLI KKNDRFASTE DVTLQDRSVV SDVTIEELKT GRKPQALPLA AAEAAEPVGP VRPAAPMPHR LTPMLANSAA EPFDDPDWLF EIKLDGYRAI AEIEGGEVQL YSRNNLSFNK RFPAIVQSLA SLPVTAVLDG EVVALDAKGR SSFQLLQNSL RTGEKNIYYY AFDLLYLDGE DLRAEPLQAR KERLRNLLPE LPWVRFSDHI REYGRQFFEL ARENNLEGIL AKRADSRYFA GRRSGDWLKI KIRLQQEAVI CGFTQPRGSR KGLGSLVLGV YENGELVYIG LTGGGFDDVG LKEMYAALQP LIQPESPFRQ QVKTSMPVTW TKPVLVCEVE FAEWTDENVM RLPIFLGLRE DKDPRSVQRE IFPAEVQPPV HHAQTDQEED VGEPAAGEKV PAEETVATAK PFVKKGGAKK GEVNLVIDGQ RLTLTNLDKV FWPEEGYTKG DVIDYYRKMA RVILPYLMDR PESMYRTPHG IAEGGFYQKE TADLIPPWIT AREIYSKHVD KNIKFLVCQD EATLIYMANL GCIEINPWLS RLQQLDYPDY LVIDLDPEDI SFEKVIETAL AVHEVLESAG AASFPKTSGA TGIHIYVPLG ARYDYDTAGV FAKLVATLAH HKVPGFTSLL RSPRQRQKKV YLDFLQNKPG QTLAAPYSIR PRPGATVSAP LRWEEVKPGL DPRQFTINTI GKRLEQVGDL FQGVLGPGID MERCLERLQN G
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