| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | GWCH70_2496 |
|---|
| Symbol | |
|---|
| ID | 7979504 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Geobacillus sp. WCH70 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012793 |
|---|
| Strand | - |
|---|
| Start bp | 2521771 |
|---|
| End bp | 2522439 |
|---|
| Gene Length | 669 bp |
|---|
| Protein Length | 222 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 41% |
|---|
| IMG OID | 644799297 |
|---|
| Product | Tetratricopeptide TPR_2 repeat protein |
|---|
| Protein accession | YP_002950457 |
|---|
| Protein GI | 239827833 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG3063] Tfp pilus assembly protein PilF |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 46 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGAAGATA AAAATCAAAT AGGAATTTCC CATATGCAAA AAGGAAACTA TGAAGAAGCG
ATAAAATGCT TTCATGATGC GATTGAGGAA AATCCGGATG ACCCGATTGG CTACATTAAT
TTTGGAACAG TGTTAGCCAG TGCTGGAGAA GAGGAAAAAG CGCTCCATTT TTTCAAAAAA
GCGATTGAGC TCGACAACAA CGCGGCGACC GCATATTACG GGATAGGATC TGTATATTAC
AAGCGTCAAC AATTTGCGCA GGCGAAGGAT ATGTTTGAAC AAGCTATTCA AAAGGGGCTA
AACGATGGAG ACGCCTTTTT TATGCTTGGA ATGTCGTTGA TGCATTTAGA GGCACCGCGT
CTTGCTCTTC CGTATTTACA GAGAGCGGTG GAGTTGAATG AACAAGATAC CGAGGCGATA
TTTCAGCTTG GGCTATGTCT TGCGCAACTC GAATTTGTTG ATGAAGCGAT GAATTATTTT
CAGAAAACGA TTCAGTTAGA TAGCAGACAT GCAGATGCGT ATTATAATTT AGGTGTTATA
TATGCTTATA AAGATGATAT AAAGACAGCG ATGGAAATGT TTACGACCGC TCTTCAGATC
CAGCCGGACC ATTTGTTGGC GGGATATGGG AAAAAGATGA TGGAAAAAGC GTTAGGAAAT
AAAGGGTAG
|
|---|
| Protein sequence | MEDKNQIGIS HMQKGNYEEA IKCFHDAIEE NPDDPIGYIN FGTVLASAGE EEKALHFFKK
AIELDNNAAT AYYGIGSVYY KRQQFAQAKD MFEQAIQKGL NDGDAFFMLG MSLMHLEAPR
LALPYLQRAV ELNEQDTEAI FQLGLCLAQL EFVDEAMNYF QKTIQLDSRH ADAYYNLGVI
YAYKDDIKTA MEMFTTALQI QPDHLLAGYG KKMMEKALGN KG
|
|---|
| |