Gene GWCH70_2319 details

Gene Information

• Locus tag: GWCH70_2319
• ID: 7977815
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Geobacillus sp. WCH70
• Kingdom: Bacteria
• Replicon accession: NC_012793
• Strand: -
• Start bp: 2366858
• End bp: 2368750
• Gene Length: 1893 bp
• Protein Length: 630 aa
• Translation table: 11
• GC content: 43%
• IMG OID: 644799129
• Product: 1-deoxy-D-xylulose-5-phosphate synthase
• Protein accession: YP_002950289
• Protein GI: 239827665
• COG category: [H] Coenzyme transport and metabolism; [I] Lipid transport and metabolism
• COG ID: [COG1154] Deoxyxylulose-5-phosphate synthase
• TIGRFAM ID: [TIGR00204] 1-deoxy-D-xylulose-5-phosphate synthase

Plasmid Coverage information

• Num covering plasmid clones: 35
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

TTGGATGTTA CCAAAATTAA AAATCCGCGC TTTTTAAAAA ATATGTCAAC AAAGCAGTTA 
ATCGAATTAA GTGCTGATAT TCGCAAATTT TTAATTGAAA AGCTGTCGAA AACAGGCGGG 
CATATCGGCC CAAATTTGGG CGTTGTCGAA CTGACCATTG CGCTTCATAA AGTGTTTGAT 
AGTCCGAAAG ATAAGTTGAT TTGGGATGTC GGCCACCAAT CATACGTCCA TAAAATTTTG 
ACGGGGCGTG CATCCGAATT TGATACATTA CGTCAATATA AAGGCTTATC AGGATTTCCA 
AAGAGAAGCG AAAGCGAACA TGACGTGTGG GAAACCGGTC ATAGTTCTAC ATCCTTATCT 
GCGGCAATGG GGATGGCAAT TGCCCGCGAT TTAAAAGGAA CGGATGAATA CATCGTTCCG 
ATTATTGGCG ACGGAGCATT AACAGGCGGC ATGGCGCTTG AAGCATTAAA TCATATCGGA 
CATGAGAAAA AAGATATCAT CGTCGTTTTA AACGATAACG AAATGTCCAT TGCTCCAAAC 
GTTGGCGCGC TCCATAATGT GTTAGGACGG TTGCGGACAG CGGGCAAATA TCAATGGGTG 
AAAGACGAGC TGGAATTTTT ATTAAAAAGA ATTCCAGCTG TTGGCGGAAA GTTAGCGGCA 
ACGGCAGAGC GCATTAAAGA TAGCTTAAAA TATTTGCTTG TTTCAGGCGT TTTTTTTGAA 
GAATTAGGGT TTACGTATCT CGGTCCTGTT GACGGACATA ATTTTGACGA TTTGTTTGAG 
AATTTGCATT ATGCAAAAAA AATAAAAGGT CCTGTACTTC TTCACGTTAT TACGAAAAAA 
GGAAAGGGAT ATAGTCCGGC GGAAAATGAT AAAGTCGGAA CATGGCATGG TACCGGACCA 
TACAAAATTG AAACAGGTGA TTTTCTAAAA CCGGTGGATA CTGCTCCATC ATGGAGCGAA 
CTTGTTAGCG AGACGGTGCG AAAATTAGCT CGCACAGATA AACGGATTGT CGCAATCACA 
CCGGCAATGC CAGTCGGATC AAAATTAGAA GGATTTGCAA GCGAATTTCC TGACCGAATG 
TTCGATGTCG GAATTGCAGA ACAACATGCA ACAACGCTTG CTGCGGGGCT TGCGACGCAA 
GGAATGAAGC CATTTTTAGC AATTTACTCG ACGTTTTTGC AGCGGGCGTA TGATCAAGTT 
GTTCATGATG TTTGCCGGCA AAATTTAAAC GTTTTTTTCG CCATTGATCG AGCAGGGCTA 
GTCGGCGCGG ACGGTGAAAC ACACCAAGGT GTGTTTGATA TCGCCTTTTT GCGCCACGTT 
CCGAACCTTG TCATTATGAT GCCAAAGGAC GAAAACGAAG GGCAGCATAT GGTGTATACG 
GCGATTCAAT ATGATGACGG ACCAATCGCG CTTCGCTTTC CGCGCGGCAA CGGACTTGGC 
GTCAAGCTCG ATGAAGAATT GAAGAAAATT CCGATAGGAA CGTGGGAAGT ATTGCGCGAA 
GGCCGAGATT TAGCGATTTT AACGTTTGGC ACTACGATTT CCATGGCATT AGAGGCCGCA 
GAGAAGCTTG CTAAAGATAA TATTTCTGTA AAAGTAGTGA ACGCTCGTTT TATTAAACCG 
ATGGATGAGA AAATATTACA TGATTTGTTA GAAAGCAATA TCCCAATTTT AACGATTGAA 
GAAGCGGTGT TGCAAGGCGG CTTTGGCAGC GCTGTTTTGG AGTTTGCCCA CGACCATGGC 
TATCATCAAG CGGTGATTAA CCGAATGGGC ATTCCTGACC GCTTCATTGA ACACGGCAGT 
GTCAAAGAGT TGTTAAATGA AATTGGTTTA ACGACAGCAC ATATTATTGA TCGTGTAAAA 
ACCATTATAC CAAGAAAACA AAAAAGGGCA TGA 

 

Protein sequence

MDVTKIKNPR FLKNMSTKQL IELSADIRKF LIEKLSKTGG HIGPNLGVVE LTIALHKVFD 
SPKDKLIWDV GHQSYVHKIL TGRASEFDTL RQYKGLSGFP KRSESEHDVW ETGHSSTSLS 
AAMGMAIARD LKGTDEYIVP IIGDGALTGG MALEALNHIG HEKKDIIVVL NDNEMSIAPN 
VGALHNVLGR LRTAGKYQWV KDELEFLLKR IPAVGGKLAA TAERIKDSLK YLLVSGVFFE 
ELGFTYLGPV DGHNFDDLFE NLHYAKKIKG PVLLHVITKK GKGYSPAEND KVGTWHGTGP 
YKIETGDFLK PVDTAPSWSE LVSETVRKLA RTDKRIVAIT PAMPVGSKLE GFASEFPDRM 
FDVGIAEQHA TTLAAGLATQ GMKPFLAIYS TFLQRAYDQV VHDVCRQNLN VFFAIDRAGL 
VGADGETHQG VFDIAFLRHV PNLVIMMPKD ENEGQHMVYT AIQYDDGPIA LRFPRGNGLG 
VKLDEELKKI PIGTWEVLRE GRDLAILTFG TTISMALEAA EKLAKDNISV KVVNARFIKP 
MDEKILHDLL ESNIPILTIE EAVLQGGFGS AVLEFAHDHG YHQAVINRMG IPDRFIEHGS 
VKELLNEIGL TTAHIIDRVK TIIPRKQKRA