| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | GWCH70_1317 |
|---|
| Symbol | |
|---|
| ID | 7978122 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Geobacillus sp. WCH70 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012793 |
|---|
| Strand | - |
|---|
| Start bp | 1379409 |
|---|
| End bp | 1380806 |
|---|
| Gene Length | 1398 bp |
|---|
| Protein Length | 465 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 41% |
|---|
| IMG OID | 644798256 |
|---|
| Product | GABA permease |
|---|
| Protein accession | YP_002949429 |
|---|
| Protein GI | 239826805 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG1113] Gamma-aminobutyrate permease and related permeases |
|---|
| TIGRFAM ID | [TIGR01773] gamma-aminobutyrate permease |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.319742 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGGCAAGAC AGAACACGGG TCTACAAAAG GGATTAAAGG AACGCCACAT GACAATGATC
GCAATAGCTG GGGTTATAGG GGCCGGACTT TTTGTGGGAA GCGGCGCAGT CATTCATTCT
ACAGGCCCTG GGGCCATTGT TTCCTATGCA TTAGCCGGCT GCTTAGTAGT TCTTGTGATG
AGAATGTTAG GAGAAATGTC TGCAGCTAAT CCTACTAGCG GCTCTTTTTC GGCATATGCA
CACGATGCCA TTGGACCTTG GGCCGGATTT ACCATCGGAT GGTTATATTG GTTCTTCTGG
GTAATCGTTA TTGCTATCGA AGCAAATGCC GGTGCTGCTA TCATTCAATA TTGGTTTAAT
AGTATTCCAA TATGGCTGTT AAGTTTAATT CTTACCATAT TGTTAACGCT TACAAATATT
TGGTCGGTTA AATCATATGG GGAATTTGAA TATTGGTTTG CGTTAATTAA AGTAGCGAGC
ATCATTTTGT TTTTAATGAT CGGGGGCGCT TTCATATTTG GACTTTATCC AAACAGCAGC
CCAATTGGGT TGAAAAATCT AATTGGAAAT GGTGGATTTA TGCCGAATGG CATCAGTTCC
ATCCTTTTAG GAATTGTCGT TGTTATTTTT TCCTTTGTTG GAACAGAAAT CGTTACGATT
GCCGCCGGAG AATCCGCTGA ACCACAGAAA GCAGTATCTA GAGCGATTAA GTCTGTCCTG
TGGAGAATCC TAGTTTTTTA TATTGGATCG ATCGCTGTAG TAGTCACTTT GTTGCCTTGG
AACTCGGCAA ACGTTTTAAA AAGCCCCTTT GTTGCGGTGT TAGAGCACAT TGGCATCCCA
GCCGCCGCAC AAATCATGAA TTTTATCGTA TTAACAGCCG TATTATCTTG TCTAAATTCA
GGGCTATATA CTACTTCAAG AATGCTTTAT TCCTTAGCGG AAAAAGGAGA AGCGCCAAAA
CGATTCCTCA AGCTAAACAA AAACGGTGTG CCAGCTCAAG CTGTTATTGC CAGCACATTC
TTTGGGTACA TCGCAGTGAT CATGAATTAC ATTTCCCCAG ATAAAGTGTT TCTATTTCTC
GTTAACTCCT CGGGAGCTAT TGCCCTGCTT GTATATTTAG TTATTGCGGT TTCACAATTG
CGTATGCGGA AAAAACTTGA ACAGAACAAC CCTGAAGCAT TAAAGATAAA AATGTGGTTA
TTCCCGTATC TAACCTATTT GACTATCTTG GTTTTATTAG TAATACTTAT CTCCATGTTA
TTTATCAAAT CCATGGTTTC CCAATTACTT TTGACGCTCT TAATCACGGC CGTAGTGATG
ATTTCTTATT TCGCATTTGC CAAAAAGCGC TTACAAATCG GCTATAACCA ACAAGCATCA
CCACTAGCGA AAGACTAA
|
|---|
| Protein sequence | MARQNTGLQK GLKERHMTMI AIAGVIGAGL FVGSGAVIHS TGPGAIVSYA LAGCLVVLVM
RMLGEMSAAN PTSGSFSAYA HDAIGPWAGF TIGWLYWFFW VIVIAIEANA GAAIIQYWFN
SIPIWLLSLI LTILLTLTNI WSVKSYGEFE YWFALIKVAS IILFLMIGGA FIFGLYPNSS
PIGLKNLIGN GGFMPNGISS ILLGIVVVIF SFVGTEIVTI AAGESAEPQK AVSRAIKSVL
WRILVFYIGS IAVVVTLLPW NSANVLKSPF VAVLEHIGIP AAAQIMNFIV LTAVLSCLNS
GLYTTSRMLY SLAEKGEAPK RFLKLNKNGV PAQAVIASTF FGYIAVIMNY ISPDKVFLFL
VNSSGAIALL VYLVIAVSQL RMRKKLEQNN PEALKIKMWL FPYLTYLTIL VLLVILISML
FIKSMVSQLL LTLLITAVVM ISYFAFAKKR LQIGYNQQAS PLAKD
|
|---|
| |