| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | GWCH70_0370 |
|---|
| Symbol | |
|---|
| ID | 7977481 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Geobacillus sp. WCH70 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012793 |
|---|
| Strand | + |
|---|
| Start bp | 424295 |
|---|
| End bp | 425824 |
|---|
| Gene Length | 1530 bp |
|---|
| Protein Length | 509 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 38% |
|---|
| IMG OID | 644797359 |
|---|
| Product | putative PAS/PAC sensor protein |
|---|
| Protein accession | YP_002948559 |
|---|
| Protein GI | 239825935 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG2208] Serine phosphatase RsbU, regulator of sigma subunit |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 55 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATTCATA AGCATTTGCA AAAAATCAGG AAAGACAAAA ATGTTTCGTT AAAAGAATTA
TTGGAACTTT TTGACGAATG GAACACACTC TGTAATAAAG CGGACCAAGT TTATTGGCTA
GCCAACTTAG CGGAAAGGCG GGTTATTTTT GTTTCTCCGT CTTGCGAGAA GATTTACGGA
ATACAGCCTG AAGCCTTTTA TCAAGATGTA GAGCTATGGA AAAAAGTTAT TCACCCGGAA
GATCGAGAAA AGGTAGAGAA AAAGCAATCT GCTCTTTGGA AGGGAAGCTG TCTTGAACAT
GAATATCGCA TTATTCATCA ACAGGATGGG ACGGTTCGTT GGGTTTTGGA TCAAACGTTT
CCTGCATTTG ATGAAAATGG AAAGCTAGTA ATGTTAAGTG GAGTGATTAC GGATATTACG
GAGATAAAAA AAATGAATGA AAAGCTTTTA CTAGCGGAAA AAGTGTACGA ACATGTACAA
CAGGCTATAT TGATTACAGA TGAAAATGGA GTTATTCAAT TTATTAATCC CGCTTTTACA
GAAATTACGG GGTACGGGTC AGAAGCAATC GGTTTATCAT TAGACTTTTT GTATTCTGGT
TACTACAATG AACATTTTTA TCAAACCATT AAGAAAACTG TCGCTGAAAA AGGACAGTGG
AGAGGGAGTC TGCGTGGGCG CCGGAAAAAT GGGGAAGTGT ATGCTCAACA GACGATGATT
ACAGCGATTC ATGATAAAGA AGGGCATCTG ATTTTTTATC TTTTTCTATT TTCAGATATG
ATCAAAAACG AAAAGACCGC AACAAGCTTA AAAGATGATT TAAAATTAGC GCAGGAAGTG
CAAAAACGTG TATTGAGCAA GCCGCTTAAA ACGGAAGCGA TTGATATATA TGGTATGTAC
GTCCCTTCAG GAGAATTAGG GGGAGATATG TACGCATGGT ATCGGATTGA TAGCGACCGA
TACGGAATCT TTTTGTTGGA TGTGATGGGG AACGGAGTAG CTGCTTCACT CATTTGTATG
TCCGTTCGTT CATTATTAAA TGGGGTTATT CGAAAATGCA TTTATCCGCA AGAAGTATTT
CATGAGTTAA ATAAACATAT GCAGTTGTTG TACCATGAAG ATGGGCCAAT GAATACGTAT
TATTTTACTG CCGTTTATGC GATGGTAAAC ACAAAAGAAA AGTTCATTGA ATATGCTTCG
GCAGGTCATC CTCCTGGCTT TTTATTTCAT CCAAACGGTT TAGTCGAGGA GCTGGACCAA
GGATGTGCCC CGATCGGGTT GTTATCGTAT CTCCATGTGG AAACGGGAAA ACTAAATTAC
GCTCCAGGAG CAACGTTAGT GCTGTACTCG GATGGAGTAG TCGAAGGGGC CCATGGTTCT
GTTAGAACCA ATATCGAAAT GTTCCGGGAA AAACTAAAAC CATATATTCA TTTAGACAAC
AAAAATATGA TAGTACATAT AAATAAAATG TTTAAGGAAG AGTATCCGTT TCTCGATGAT
ATTTCTGTCG TTGTGGCGAA ATTGCATTAA
|
|---|
| Protein sequence | MIHKHLQKIR KDKNVSLKEL LELFDEWNTL CNKADQVYWL ANLAERRVIF VSPSCEKIYG
IQPEAFYQDV ELWKKVIHPE DREKVEKKQS ALWKGSCLEH EYRIIHQQDG TVRWVLDQTF
PAFDENGKLV MLSGVITDIT EIKKMNEKLL LAEKVYEHVQ QAILITDENG VIQFINPAFT
EITGYGSEAI GLSLDFLYSG YYNEHFYQTI KKTVAEKGQW RGSLRGRRKN GEVYAQQTMI
TAIHDKEGHL IFYLFLFSDM IKNEKTATSL KDDLKLAQEV QKRVLSKPLK TEAIDIYGMY
VPSGELGGDM YAWYRIDSDR YGIFLLDVMG NGVAASLICM SVRSLLNGVI RKCIYPQEVF
HELNKHMQLL YHEDGPMNTY YFTAVYAMVN TKEKFIEYAS AGHPPGFLFH PNGLVEELDQ
GCAPIGLLSY LHVETGKLNY APGATLVLYS DGVVEGAHGS VRTNIEMFRE KLKPYIHLDN
KNMIVHINKM FKEEYPFLDD ISVVVAKLH
|
|---|
| |