| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | GWCH70_0050 |
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| Symbol | |
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| ID | 7978488 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Geobacillus sp. WCH70 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012793 |
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| Strand | + |
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| Start bp | 58809 |
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| End bp | 62342 |
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| Gene Length | 3534 bp |
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| Protein Length | 1177 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 644797010 |
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| Product | transcription-repair coupling factor |
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| Protein accession | YP_002948258 |
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| Protein GI | 239825634 |
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| COG category | [K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG1197] Transcription-repair coupling factor (superfamily II helicase) |
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| TIGRFAM ID | [TIGR00580] transcription-repair coupling factor (mfd) |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGCTTTCGT TGCATCGCTA TTTTGTTGAG AATCAAGATG TCCGTTCCAT TATCGAAGGC
GTGAAAGCTA GGTTGAAAGA ACAGCTTGTT GTCGGGTTAT CCGGCTCTGC CCGGTCTGTT
TTCATTTCGT CGTTATATAG AGAAACAGAA AGGCCGCTCT TAGTGATTGC ACACAATTTG
TTTCAAGCAC AAAAAATATA TGATGACCTT GTTCAACTGC TTGGGGCGGA AGAGGTATTT
CTTTATCCAG TAAACGAAGT AATTGCCGCA GAAATGGCGA TAGCCAGTCC AGAATTAAAG
GCTCAGCGCT TAGAAGTGAT GAATTATTGG CTGAAACATA ACAAAGGTGT TGTCATTTGT
CCTGTTGCCG GATTACGACG TCTACTTCCT CCTGTGTCAT TATGGAGAGA TCATATGTTG
ACATTGGAGG TTCATCATCA TATAGATGTT GAACATTATA AGCAACGGTT CGTACAAATG
GGATACAAGC GTGTTGCAAC TGTGTCAACC CCTGGGGAGT TTAGTGTTCG CGGCGGTATT
ATTGATATTT ATCCGTTAAC GGCAGAATTT CCATATCGGA TTGAGCTATT TGATACAGAA
ATCGAATCGA TTCGTACGTT TACCGCGGAT GATCAGCGTT CCCGCGATGA AGTACAACAA
GTAACCATTG GACCTGCTGA TGAAATGATT GTTTACGGGG AGATGCTGGA GCGGGGAATC
GAACGAATTG AAGCAGGATT AGCGGAAAGC CTCAACAAAT TAAAAGATGA GAAAGCCAAA
CAATTATTGC TAGAACATGT GTCGTCAGAG CTTGAGCAGT TAAAACAAGG GCAGGAAATT
GAACAACAAT ATAAATATAC GGCGCTCTTT TATAACGAGC CTGCTAGTTT GCTAGATTAC
ATGCCGGAAA ATGGAATATT GTTGATGGAT GAAATGAGCA GATTACAAGA GATGGCAGAA
AGTTTAGATA AAGAAGAAGC AGAATGGTAT ACAAGTTTAC TTAGCGAGGG AAAAATCATC
CATGATGTTC CAATTTCTCA CTCTTTTTCT GAATTATTAC AAAAACATCC AAAACAGCGG
ATTTATTTAT CCATTTTTCT ACGTCATGTT CCGCATACAC ATCCAGAAAA CATTGTCAAT
ATTTCGTGCA AGCAAATGCA AAACTTCCAC GGACAAATGT CTTTGCTTAA GTCTGAGCTA
GAGAGATGGA AAAAAGCAAA TTATGCTGTT GTATTTTTAG CACCGAATGC GGAACGGATG
AAAAAACTGC AATCGGTGTT TGAAGATTAC GAAATCGATG TCGCCCCGCT AAGCGATGAA
GCAATGCTGA TGCACGGCAA ATATCAAATG CTCGAGGGAG ATTTAAATAC AGGATTTGAG
CTGCCGATGC AAAAGCTGGC TGTGATTACA GAAGAAGAAT TGTTTAAAAA GCGGGCGAAA
AGACCAATTC GCCGCCAAAA ATTATCGAAT GCGGAGCGGA TTAAAAGTTA TTCGGAGCTG
CAAGTGGGCG ATTACGTGGT TCATGTCAAC CACGGTATCG GCAAATATTT GGGAATCGAA
ACATTAGAGA TTAACGGTGT CCATAAAGAT TATATCCATA TTCAATATCA GGGCAGCGAT
ACGTTATATG TGCCTGTGGA TCAAATTGAT CAAGTACAAA AATACGTTGG TTCAGAAGGA
AAAGAGCCGA AAATTTATAA GTTAGGCGGG TCCGAATGGA AAAAAGTCAA AAAGAAAGTC
GAGTCGTCCG TCCAAGATAT TGCTGAAGAT TTAATTAAGT TATATGCGGA ACGCGAAGCA
AGCAAAGGAT ACGCGTTTTC CCCGGATACA GAAATGCAGC GGGAATTTGA AGCGGCGTTT
CCGTATCAGG AGACAGAAGA TCAGCTGCGT TCGATTGAGG AAATTAAACG CGACATGGAG
AGCGACAAGC CGATGGACCG TCTTCTTTGC GGCGACGTTG GCTACGGAAA GACGGAAGTT
GCGCTGCGGG CAGCGTTTAA AGCGATTATG GACGGGAAAC AAGTCGCGTT TCTTGTACCG
ACGACGATTT TAGCACAGCA GCATTACGAA ACAGTTCGGG AGCGGTTTCA AGGATTTCCG
ATTAACGTTG GACTTTTAAA TCGATTCCGG ACGAGAAAAC AGCAGGCGGA AACGATCAAA
GGGCTGAAAG ACGGAACGAT TGATATGGTC ATCGGCACGC ACCGCCTATT ATCGAAAGAT
GTGCAGTTTA AAGATTTAGG GCTTCTCATT ATTGACGAAG AGCAGCGGTT TGGCGTCACG
CATAAGGAAA AAATCAAGCA GCTAAAGGCA AATATCGATG TGTTGACATT AACGGCAACA
CCAATTCCAA GGACGTTGCA TATGTCCATG ATCGGAGTGC GTGACCTGTC CATTATTGAA
ACGCCGCCAG AAAATCGTTT CCCGGTGCAA ACGTATGTGA TGGAATATAC CCCTGAACTT
ATACGAGAGG CTATTGAACG AGAGCTGGCA AGAGATGGCC AAGTCTTTTT CTTATACAAT
CGTATTGAAG ATATTGATGC CAAAGCGGAA GAAATTTCAC AGCTCGTACC GGAAGCGCGT
GTTACTTATG CGCACGGGCG AATGACAGAA AATGAGTTGG AGTCCACGAT GTTGGCGTTT
TTAGAAGGCC AGTATGACGT GCTTGTCACA ACGACGATTA TTGAGACAGG TGTTGACATT
CCAAATGTGA ACACATTAAT TGTCTATGAT GCAGATCGCA TGGGATTATC GCAATTGTAT
CAGCTGCGCG GTCGCGTCGG ACGTTCTAAT CGCGTTGCTT ATGCGTATTT TACGTATCGG
AAAGATAAAG TGCTCAATGA GGATGCTGAG AAACGTTTAC AAGCAATCAA AGAATTTACC
GAGCTTGGCT CAGGGTTTAA AATTGCGATG CGTGACTTAT CGATTCGCGG CGCTGGGAAT
ATATTAGGCG CGCAACAACA TGGATTCATT GATTCTGTCG GCTTTGATTT ATATTCACAA
ATGTTAAAAG AAGCAATCGA AAAACGAAAA GGAATCAAAC AGGAAGAAGC AAAACCTGAA
GTAACGATTG ATTTAGAAGT CGACGCTTAT ATTCCAGATA CGTATATTTC TGACGGGTTA
CAAAAAATTG ATATGTACAA GCGTTTTAAA GCGGTGGAAA CGATGGAAGA CGTGGAAGCA
TTGCGGGATG AAATGCTTGA CCGCTTTGGT GAGTATCCGG ATGAAGTCGC TTATTTATTC
CAAATTGCGG AAATTAAAGT ATATGCGAAA CAAATAGGAG TAGAATCGAT TAAACAACAG
AAACAGCAAA TTGAAATTTT ATTTGATGAG AACGCATCAA AAGATGTGGA AATTCAGCGT
TTATCGAAAA TCGGCAGGCA ATACGGTCGC TTATTCGGTT TTGGAATGGA AGGTTCCAAA
TTAAAAATTG TTTTATACAT TAAAGAATTG AAGCCACAAG AATGGTTAAT GATTTTATAT
GAAACGTTAA AAGAGCTTTC GGGCGTAAAA GGTGAAAAAT CGATTATTGC ATAA
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| Protein sequence | MLSLHRYFVE NQDVRSIIEG VKARLKEQLV VGLSGSARSV FISSLYRETE RPLLVIAHNL
FQAQKIYDDL VQLLGAEEVF LYPVNEVIAA EMAIASPELK AQRLEVMNYW LKHNKGVVIC
PVAGLRRLLP PVSLWRDHML TLEVHHHIDV EHYKQRFVQM GYKRVATVST PGEFSVRGGI
IDIYPLTAEF PYRIELFDTE IESIRTFTAD DQRSRDEVQQ VTIGPADEMI VYGEMLERGI
ERIEAGLAES LNKLKDEKAK QLLLEHVSSE LEQLKQGQEI EQQYKYTALF YNEPASLLDY
MPENGILLMD EMSRLQEMAE SLDKEEAEWY TSLLSEGKII HDVPISHSFS ELLQKHPKQR
IYLSIFLRHV PHTHPENIVN ISCKQMQNFH GQMSLLKSEL ERWKKANYAV VFLAPNAERM
KKLQSVFEDY EIDVAPLSDE AMLMHGKYQM LEGDLNTGFE LPMQKLAVIT EEELFKKRAK
RPIRRQKLSN AERIKSYSEL QVGDYVVHVN HGIGKYLGIE TLEINGVHKD YIHIQYQGSD
TLYVPVDQID QVQKYVGSEG KEPKIYKLGG SEWKKVKKKV ESSVQDIAED LIKLYAEREA
SKGYAFSPDT EMQREFEAAF PYQETEDQLR SIEEIKRDME SDKPMDRLLC GDVGYGKTEV
ALRAAFKAIM DGKQVAFLVP TTILAQQHYE TVRERFQGFP INVGLLNRFR TRKQQAETIK
GLKDGTIDMV IGTHRLLSKD VQFKDLGLLI IDEEQRFGVT HKEKIKQLKA NIDVLTLTAT
PIPRTLHMSM IGVRDLSIIE TPPENRFPVQ TYVMEYTPEL IREAIERELA RDGQVFFLYN
RIEDIDAKAE EISQLVPEAR VTYAHGRMTE NELESTMLAF LEGQYDVLVT TTIIETGVDI
PNVNTLIVYD ADRMGLSQLY QLRGRVGRSN RVAYAYFTYR KDKVLNEDAE KRLQAIKEFT
ELGSGFKIAM RDLSIRGAGN ILGAQQHGFI DSVGFDLYSQ MLKEAIEKRK GIKQEEAKPE
VTIDLEVDAY IPDTYISDGL QKIDMYKRFK AVETMEDVEA LRDEMLDRFG EYPDEVAYLF
QIAEIKVYAK QIGVESIKQQ KQQIEILFDE NASKDVEIQR LSKIGRQYGR LFGFGMEGSK
LKIVLYIKEL KPQEWLMILY ETLKELSGVK GEKSIIA
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