Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | GSU3239 |
Symbol | cafA |
ID | 2688290 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Geobacter sulfurreducens PCA |
Kingdom | Bacteria |
Replicon accession | NC_002939 |
Strand | - |
Start bp | 3551672 |
End bp | 3553267 |
Gene Length | 1596 bp |
Protein Length | 531 aa |
Translation table | 11 |
GC content | 59% |
IMG OID | 637127932 |
Product | ribonuclease G |
Protein accession | NP_954280 |
Protein GI | 39998329 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG1530] Ribonucleases G and E |
TIGRFAM ID | [TIGR00757] ribonuclease, Rne/Rng family |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 1 |
Plasmid unclonability p-value | 0.0328342 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | TTGCGCCGGA AGCCCTGGCT GAGGCCAGGA TCGAGAAGCT CCAGGTGCTT TTCAAGGAAT CGTGATTCAA TTTTTCATAC AGGATACCCA TCAATGGCCA ATGAACTGGT GATCAACACC TCGTCCCACG AGACCCGCAT CGCTCTCATC GAGAACGGCA CCATTGCCGA GCTCTACATT GAGCGGAGCC GCGAAAAGGG GATCGTCGGC AACATCTACA AGGGGAGGGT CGTACGCGTC CTTCCCGGCA TGCAGGCGGC ATTTGTCGAC ATCGGCCTGG AGAAGGCGGC TTTTCTCTAC GTGGCCGATG TGTTCGATGC CATGGAGGAG TTCGAGACCT TCATGGAGGT GAACGGCGAG GAGAGCGACA GTGAACGGCA GGTTCTTCAC CCGCTCCACC CCATCGAAGA ACTCCTTCAG GAAGGGCAGG AAATTCTGGT TCAGGTGTCC AAGGAACCCA TCGGCACCAA GGGGGCCCGT ATCACCTCTC ATGTGTCGCT GCCTGGCCGC CACCTGGTCT ACATGCCGAC GGTGGACCAC GTGGGAGTGT CTCGGCGGAT CGAAGATGAG CCGGAGCGCG AGCGGCTTAA GGAAATCGTG GGCAAGGCGA AGCCGGCCGG GGGCGGGTTC ATCGTTCGGA CCGCCGCCGA GGGCAAGACC GAGGAGGATC TGGTCGCCGA CATGAACTAC CTGACGAAGC TCTGGGAAGA GGTTGTCAGA CGCAACGAAA AGGCTCATGC CCCCTGTCTC ATTCATGCCG ACCTGGACGT GACCCAGAAG GTCATCCGTG ACATCCTCAC CGAAAACGTT TCCCGCATCG TGGTCGACTC CCGGCACGAG CACGACAAGA TCGTCCAGTT CATCTCCACC TTCATGCCGA AAATGAAGTA CTCCATGGAG CTCTACGACG ACGAGGAGCC CATCTTTGAT CACTTCGGGC TGGAGGTGGA GATCAGCCGG GCACTGGGAC GCAAGGTCTG GCTCAAGAGC GGCGGCTATA TCATCATCGA GCAGACCGAG GCCCTTACCG CCATCGATGT CAACACCGGC CGGTTCGTGG GCAAACACAA CCTGGAGGAC ACCATCCTCA AGACCAACCT GGAGGCGGTT AAGGAGATCG CCTACCAGCT CAGGCTGCGC AATATCGGCG GGATCATCAT CATCGACTTC ATCGACATGG AGAAGGAGGT CAACCGGGAG AAGGTCTTTA CGGCGCTGGA GGAGGCCATG AAGGCCGACA AGTCCAAGAC CAACATCCTG AAGATCTCGG ATCTGGGCCT GGTGGAGATG ACCCGGAAGC GGGTGCGGGA GTCTATCGGC AGGATGATGT GCGAGCCCTG CCCCTACTGC GAGGGGAGAG GGTACGTGAA GTCCAAGACA ACGGTCTGTC ACGAGATATT CCGCGAACTG CGCCGGGAGA TGCTCGATAT TCGCGGCAGC AAGGTAATGC TCACCGTGCA TCCCCAGGTG GCCGATCTCC TCTACGACGA GGAGCGGCGA GGGTTGGAGG AGTTGGAGAA GAAGTTCAAG AAGCGGATTA CGGTCCGGGC CAAGCCCGGT TTTCATCAGG AGCAGTTCGA GATCGCCATC AGCTGA
|
Protein sequence | MRRKPWLRPG SRSSRCFSRN RDSIFHTGYP SMANELVINT SSHETRIALI ENGTIAELYI ERSREKGIVG NIYKGRVVRV LPGMQAAFVD IGLEKAAFLY VADVFDAMEE FETFMEVNGE ESDSERQVLH PLHPIEELLQ EGQEILVQVS KEPIGTKGAR ITSHVSLPGR HLVYMPTVDH VGVSRRIEDE PERERLKEIV GKAKPAGGGF IVRTAAEGKT EEDLVADMNY LTKLWEEVVR RNEKAHAPCL IHADLDVTQK VIRDILTENV SRIVVDSRHE HDKIVQFIST FMPKMKYSME LYDDEEPIFD HFGLEVEISR ALGRKVWLKS GGYIIIEQTE ALTAIDVNTG RFVGKHNLED TILKTNLEAV KEIAYQLRLR NIGGIIIIDF IDMEKEVNRE KVFTALEEAM KADKSKTNIL KISDLGLVEM TRKRVRESIG RMMCEPCPYC EGRGYVKSKT TVCHEIFREL RREMLDIRGS KVMLTVHPQV ADLLYDEERR GLEELEKKFK KRITVRAKPG FHQEQFEIAI S
|
| |