| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | GSU3061 |
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| Symbol | shc-2 |
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| ID | 2686897 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Geobacter sulfurreducens PCA |
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| Kingdom | Bacteria |
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| Replicon accession | NC_002939 |
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| Strand | + |
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| Start bp | 3364460 |
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| End bp | 3366652 |
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| Gene Length | 2193 bp |
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| Protein Length | 730 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 637127754 |
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| Product | squalene-hopene cyclase |
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| Protein accession | NP_954103 |
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| Protein GI | 39998152 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG1657] Squalene cyclase |
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| TIGRFAM ID | [TIGR01507] squalene-hopene cyclase
[TIGR01787] squalene/oxidosqualene cyclases |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.299317 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCAAAGG GTATACTCAA CAAGTTTGCC GTGATAGCCG GCACCAAGAA GGCCGGACCT
CCGGCCGGGG AAGAACGCAC CGTCATCGCA CCCATAAAAG AGATATCGGG AAAGGCCGTC
CACTGCAGTC AGGCTGTCAA AAAGGCGGAG GAGTATCTCC TGGCGCTCCA GAACCCGGAG
GGGTACTGGG TTTTCGAGCT AGAAGCGGAC GTCACGATAC CGTCTGAGTA CATCATGCTT
CAGCGGTTCC TCGGCAGGGA GATTTCCCCG GAACTGGGGA AGCGGCTGGA GAACTATCTC
CTGGACCGGC AACTGCCCGA CGGCGGCTGG CCCCTCTACG CCGAGGACGG ATTCGCCAAC
ATCAGCGCCA CGGTCAAGGC GTATCTCGCC CTCAAGGTGC TGGGGCATTC ACCCCAGGCA
CCCCACATGA TACGCGCGCG CCTCATGGTC CTCAGCCTCG GCGGCGCGGC CAGATGCAAT
GTGTTCACGC GCATCCTGCT GGCCCTGTTC GGTCAGATTC CCTGGCATAC CCCGCCGGCA
ATGCCCGTGG AAATCGTGCT TCTCCCCCAG TGGTTTTTCT TCCATTTGAG CAAAGTCTCC
TACTGGTCGA GAACCGTCAT TGTCCCTCTG CTGCTGCTCT ACGCCAAACA GCCCGTGTGT
CGGCTGCGGC CCGAGGAGGG GATCCCCGAA CTGTTCAGCA CGCCGCCCGA TAAACTGCGT
CACCTGGATG GCTTTCAACC GGGGTACTGG CGGAAAAACG CCTTCATCAT CTTTGACCGC
CTGCTCAAGC GCTTCAACCG ATTCATTCCT TCCGCCCTGC ACCGGAAAGC CATTGCCGAA
GCAGAACAGT GGACCAGGTC CCACATGCAG GGCAGCGGCG GGATCGGCGC CATTTTCCCG
GCCATGGCCT ATGCGGTCAT GGCCCTCCGC GTACTCGGCT GCGGAGAAGG GGACCCTGAC
TATATTCGCG GACTGCAGGC CATCGACGAC CTGCTCCAGC ACCGGACTCC GCAGGAAGCA
GACCCCCCCC GCACAGACGG TACGTGCATT GACAGCGGCA TGTCGGCGGC TTTTGCCCTC
ACCCCCTCTG CCCACGCGGC AGCGGACGGT ACAGGGAGCA GCAGCATCTG CCAGCCGTGC
AATTCTCCGA TCTGGGACAC CTGCCTGAGC CTTTCGGCGC TCATGGAAGC GGGCATGCCC
GCGAGCCACC CCGCGGCGAC GCAGGCTGTT GAATGGCTCT TGTCACAGCA GATCCTCTCG
CCCGGCGACT GGTCGCTGAA GGTGCCCGAC CTGGAGGGGG GCGGATGGGC GTTCCAGTTC
GAGAACACCC TCTACCCCGA CCTGGACGAC ACCTCGAAGG TCATCATGTC GCTTCTACGG
GCCGGCGCGC TGGAGAATGA GCGCTATCGC GACCGGATCG CCCGCGGCGT GAACTGGGTG
CTCGGGATGC AGAGCAGTGA CGGCGGGTGG GCCGCCTTTG ACATCGACAA CAACTACCAC
TACCTGAACG ACATCCCGTT CGCCGACCAT GGGGCGCTCC TCGACCCGAG CACATCTGAC
CTGACGGGAC GCTGCATCGA GCTTCTCTCC ATGGTCGGTT TCGACAGGAC GTTTCCGCCC
ATCGCGCGGG GGATCGGGTT CCTGCGCTCG GAACAGGAAG AAAACGGCGC CTGGTTCGGC
CGCTGGGGGG TGAACTACAT CTACGGTACC TGGTCGGTGC TGTCAGGCCT CAGGCAGGCC
GGTGAAGATA TGCAGCAGCC CTATATCCGC AAGGCGGTGG GATGGCTGGC GTCATGCCAG
AACCACGACG GTGGATGGGG AGAAACCTGC TATTCCTATG ACGATCCTTC GCTGGCCGGC
AAGGGGGCAA GCACCCCGTC CCAGACGGCC TGGAGCCTCC TGGGGCTCAT GGCCGCGGGA
GAAGTCAACA GCTTGGCCGT TCGGCGGGGT GTACGCTACC TGCTCGACCA CCAGAACCAA
TGGGGAACCT GGGAGGAAAA ACATTTTACC GGAACCGGTT TCCCGAGGGT CTTTTACCTG
CGCTACCACG GGTACCGCCA CTTCTTTCCC CTGTGGGCGC TCGGCGTCTA TTCACGGCTC
AGCTCAGGAC AAAAGGCCTG TCAGGACGAG CGTCGCCATG CATCCCCCGG CGACCTCCAT
CTGCCTTGGC TGGAGAGGAT CAAGAAACGA TAA
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| Protein sequence | MAKGILNKFA VIAGTKKAGP PAGEERTVIA PIKEISGKAV HCSQAVKKAE EYLLALQNPE
GYWVFELEAD VTIPSEYIML QRFLGREISP ELGKRLENYL LDRQLPDGGW PLYAEDGFAN
ISATVKAYLA LKVLGHSPQA PHMIRARLMV LSLGGAARCN VFTRILLALF GQIPWHTPPA
MPVEIVLLPQ WFFFHLSKVS YWSRTVIVPL LLLYAKQPVC RLRPEEGIPE LFSTPPDKLR
HLDGFQPGYW RKNAFIIFDR LLKRFNRFIP SALHRKAIAE AEQWTRSHMQ GSGGIGAIFP
AMAYAVMALR VLGCGEGDPD YIRGLQAIDD LLQHRTPQEA DPPRTDGTCI DSGMSAAFAL
TPSAHAAADG TGSSSICQPC NSPIWDTCLS LSALMEAGMP ASHPAATQAV EWLLSQQILS
PGDWSLKVPD LEGGGWAFQF ENTLYPDLDD TSKVIMSLLR AGALENERYR DRIARGVNWV
LGMQSSDGGW AAFDIDNNYH YLNDIPFADH GALLDPSTSD LTGRCIELLS MVGFDRTFPP
IARGIGFLRS EQEENGAWFG RWGVNYIYGT WSVLSGLRQA GEDMQQPYIR KAVGWLASCQ
NHDGGWGETC YSYDDPSLAG KGASTPSQTA WSLLGLMAAG EVNSLAVRRG VRYLLDHQNQ
WGTWEEKHFT GTGFPRVFYL RYHGYRHFFP LWALGVYSRL SSGQKACQDE RRHASPGDLH
LPWLERIKKR
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