| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | GSU2549 |
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| Symbol | topA |
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| ID | 2687248 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Geobacter sulfurreducens PCA |
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| Kingdom | Bacteria |
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| Replicon accession | NC_002939 |
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| Strand | - |
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| Start bp | 2810320 |
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| End bp | 2812593 |
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| Gene Length | 2274 bp |
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| Protein Length | 757 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 637127239 |
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| Product | DNA topoisomerase I |
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| Protein accession | NP_953595 |
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| Protein GI | 39997644 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0550] Topoisomerase IA
[COG0551] Zn-finger domain associated with topoisomerase type I |
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| TIGRFAM ID | [TIGR01051] DNA topoisomerase I, bacterial |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.0550694 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCCCAAC ATCTCGTCAT AGTAGAATCT CCTGCCAAGG CTAAGACCAT AGAGAAGTTC
CTCGGCCCGG ACTACAAGGT GCTCGCATCC TACGGCCATG TGCGCGCCCT GCCGAGCAAG
CAGGGCTCCG TGGACGTGGA GCACGACTTC GAGCCCCGCT ACGCCGTCCT GCCCGAGAGC
AAACGGCACA TCGACGCCAT CAAGAAGGAG TTGAAGGCGA GCGATTCGCT CCTGCTGGCC
ACCGACCCCG ACCGGGAAGG GGAGGCCATC TCCTGGCACC TGCTGGCGGC CCTGGGCGTG
AAGCCCGAGA AACCGCCGGT ACCGGTCAGG CGGGTGGTGT TCCACGAGAT CACCAAGGAC
GCCATAGTCC ATGCCGTGGA GAATCCCCGC GATATCTCAC AGGATCTGGT GGACGCCCAG
CAGGCTCGCT CAATTCTCGA TTATCTCGTG GGTTTCAATC TCTCCCCCTT CCTCTGGAAG
AAGATTCGTT ACGGCCTTTC CGCCGGCCGG GTCCAGTCGG TGGCCCTGCG GCTCATCTGC
GAGCGGGAGA AGGAGATCCA GGCGTTCCAG TCCCAGGAAT ACTGGACCAT CGGCGCGGAG
CTGGCCAAGG AGGGGGGGCA GAAGTGCACC GCCAATCTGG TCGAAGCCGA GGGGAAGAAG
CTCGACAAGT TCGACATCCC CGATCAGGCT GCGGCCGACC GGCTCGTGAA GGCCCTGGAG
AACGCCACCT TCACTGTGGA CAAGGTGACG AAGAGCGAGC GCAAGCGGAC GCCGGCGCCG
CCGTTTACCA CATCGACCCT CCAGCAGGAG GCTGCCCGCA AACTGGGCTT TTCGGCCAAA
AAGACCATGG CCACGGCCCA AAAGCTCTAC GAAGGGGTCG CCATCGACGA AGGGCTCGTG
GGTCTCATCA CTTACATGCG TACCGACAGC GTGGTGCTGT CGAACCAGGC ACTGCAGGAG
GCCCACCAGG TCATCACTTC CCTGTACGGT CCCGAATACG CCCTTGCCAA GCCCCGCTTC
TACAAAAACA AGGCTAAGAA CGCCCAGGAG GCCCACGAGG CGGTCCGCCC CACCTCCATC
GCCCGCACCC CGGCGGAGCT GAAAAAGTAC CTCTCCTCCG ACCAGTTCAA GCTGTACGAC
CTGATCTGGA AGCGGACCGT GGCCTGCCAG ATGGCCGAGG CGCTCCTGGA CCAAACCTCC
GTCGATATCG GCGCGGGCAA GGGCTACCGC TTCCGGGCCG CCGGCACCGT GATCCGCTTT
CCCGGATTTA TGAAGCTGTA CATCGAAGGG GTGGACGATC AGGCCGAAGA GAAGGAGGGG
ACCCTCCCTC CCCTCACCGA AGGGGAACTC CTGAAGCTCC TGAAGCTCCT CCCGGAGCAG
CACTTCACCC AGCCGCCCCC CCGGTACACC GAGGCGAGCC TGGTGAAGAC GCTGGAAGAG
TACGGCATCG GGCGCCCCTC AACCTATGCC TCCATCATGA ACACGCTCCT GGAGCGCAAG
TACGCCCGCC TCGACAGCAA GCGCTTCATC CCCGAGGATG TGGGGATGGT GGTCAACGAT
CTTCTGACCA ACCATTTCAC CACGTACGTG GACTACAACT TCACCGCCAC CCTTGAGGAA
GAGCTCGACC AGGTCTCCCG GGGGGAAAAG CGGTGGAAGC CGCTGCTGCG CGAGTTCTGG
GAGCCCTTCC AGGGACTGCT CAAACAGAAA GAGGGCGAGG TCAGCAAGGC GGACCTCACC
ACCGAGGCCA CGGACGAGGC ATGCCCCGAA TGCGGAAAAC CCCTGGTGGT GAAGCTCGGC
AAGCGCGGCA AGTTCATTGC CTGCTCCGGT TACAAGGAAG GGTGCACCTA TACCCGCAAC
ATCGACCAGG GTGAGGGAAG AGAGCAGGCG GAGCCGGTCC TGTCCGAGGA AAAGTGCGAC
AAATGCGGCA GCCCCATGCT CATCAAGGAC GGGCGCTTCG GCAAGTACCT GGCCTGCTCG
GCCTATCCCG CCTGCAAGAA CATCCAGCCC CTGGTGAAGC CCAAGGGGAC CGGCCATACC
TGCCCCGAAT GCAAGGAAGG GGAGCTGACC GAGAAAAAGT CCCGCTACGG CAAGATGTTC
TACTCCTGCA ACCGCTATCC CCAGTGCAAG TTCGCCCTCT GGGACCCGCC CCAGCCGGGG
CCGTGCCCCA AGTGCGGCTT CCCGCTGCTG GTGAAGAAGG TCTACAAGCG GGAAGGGGAG
TTCCTCAAGT GTCCCAAGGA AGGATGCGAC TACCGGACCG AAGGGAAAAA GTAA
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| Protein sequence | MSQHLVIVES PAKAKTIEKF LGPDYKVLAS YGHVRALPSK QGSVDVEHDF EPRYAVLPES
KRHIDAIKKE LKASDSLLLA TDPDREGEAI SWHLLAALGV KPEKPPVPVR RVVFHEITKD
AIVHAVENPR DISQDLVDAQ QARSILDYLV GFNLSPFLWK KIRYGLSAGR VQSVALRLIC
EREKEIQAFQ SQEYWTIGAE LAKEGGQKCT ANLVEAEGKK LDKFDIPDQA AADRLVKALE
NATFTVDKVT KSERKRTPAP PFTTSTLQQE AARKLGFSAK KTMATAQKLY EGVAIDEGLV
GLITYMRTDS VVLSNQALQE AHQVITSLYG PEYALAKPRF YKNKAKNAQE AHEAVRPTSI
ARTPAELKKY LSSDQFKLYD LIWKRTVACQ MAEALLDQTS VDIGAGKGYR FRAAGTVIRF
PGFMKLYIEG VDDQAEEKEG TLPPLTEGEL LKLLKLLPEQ HFTQPPPRYT EASLVKTLEE
YGIGRPSTYA SIMNTLLERK YARLDSKRFI PEDVGMVVND LLTNHFTTYV DYNFTATLEE
ELDQVSRGEK RWKPLLREFW EPFQGLLKQK EGEVSKADLT TEATDEACPE CGKPLVVKLG
KRGKFIACSG YKEGCTYTRN IDQGEGREQA EPVLSEEKCD KCGSPMLIKD GRFGKYLACS
AYPACKNIQP LVKPKGTGHT CPECKEGELT EKKSRYGKMF YSCNRYPQCK FALWDPPQPG
PCPKCGFPLL VKKVYKREGE FLKCPKEGCD YRTEGKK
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