| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | GSU1987 |
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| Symbol | |
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| ID | 2686148 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Geobacter sulfurreducens PCA |
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| Kingdom | Bacteria |
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| Replicon accession | NC_002939 |
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| Strand | - |
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| Start bp | 2178594 |
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| End bp | 2181188 |
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| Gene Length | 2595 bp |
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| Protein Length | 864 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 637126678 |
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| Product | TPR domain-containing protein |
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| Protein accession | NP_953036 |
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| Protein GI | 39997085 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3063] Tfp pilus assembly protein PilF
[COG5010] Flp pilus assembly protein TadD, contains TPR repeats |
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| TIGRFAM ID | [TIGR02917] putative PEP-CTERM system TPR-repeat lipoprotein
[TIGR03504] FimV C-terminal domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.944233 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGAAACTGC TCCAGGAGGG GAATCCGGGC GGTGCGGTCG TTCTCTTTAA AAGCGCCCTG
GAAAAAGATC AGAATTTCCA GGATGCACGC TACCAACTGG CCAAAGCGTA TCAGGCCTTG
GGCAAATACG AACAGGCTGA GAAAGAATAT CTCAAAGTTC TGAAGCAGAA TCCGTCCAAA
ACCGACATCG TTCTTGAACT GGCCAAGCTC TACAACTCAC AGAGGAAGCC GGATCAGGCT
GTCGAGCAGG CCGGTAAATA CCTCCAATCA AATCCCGGCT CTGCAGAGGC CCTTGAAGTA
CTGGGTCTCG GTTATGCACT GAAGGGGATG CCTGCAGAGG CTGAACGGAA TTTCCTGCTT
GCCCTCGAAA AGGAGCCGCG ACGGACTTCC GCGAAGCTCC AGTTGGCGGT TCTCCTGATG
GAACAGAAAT CGAGCCGTGA AAAGGAAGCC CGTGCACTCA TAGACGAAAT CCTGACGGCT
GATCCCGGCA ACGTGAAGGC CCACAATCTT CTGGCCAGCT ACGAGCTGTC TCTCGGCAAT
CGCGAACAGG CGCTGGAGAT CTATCGGAAG GTTGCGGCGC TGACGCCTGG GGACCCGGCC
CCACTTTACC GCCAGGGGGT CATTCTCCTG GAAAAGGGTG AGATGGATAA AGCCGAGAAG
ACTGCCGAGA CTCTGGTGCA AAAGTTCCCC CAAAAGTCCG AGGGAGCCCG TCTGAAGGGA
CTGATAGCGT ACCAGCGCAA GAACTATGCT GACGCTATTA CCGCTCTCCA GACTTCGGTG
AAGATAGCGC CTTCCCTGGA AGGGCTCTAC TACCTCGGGT TGAGCATGTA CAGCCGCGGC
GAGCTCGAGA ATGCTCTGAG CCAGTTCCGC CGCATCCTGG ACCATACGCC GGATTTCGTC
CAGGCCCGGC TCCTGACCGC CTTGATTCTG CTCAACCAAA AGAGGGTCGA CGATGCCATT
GCCGAGGCAA ACCGGGCCAT CGAGACCGAC AGCCGGAGCG CCCTTGCCCG CAATATACTC
GGGAGTGCGT ATCTTGCCAA AGGAATGTAC GACGAGGGCA TTCGCGAACT CAACCGTGCC
ACCGAGCTCG ATCCGAAAAT TGTCGATGCC CATCTTAAGA AAGGCATTTT CAATCTCAGC
AAAGGACGCG TACGCGAGGC CGAGAGCGAT TTCACCACAG CCGTCAGAGT TGCCCCGGAG
ATGCTCAACT CGCGGTTGGT GCTTGCTTTC CACTACATGC GGCAGCACCG CAGCGACCGT
GCCCTGGCCA CTCTGAAGGA GGGGCTGACG GGCACCAAAG GGGATGCCTC CCTTTACAAC
ACCATGGCCG CCATCATGTT CAACGAGCGG AAGCCGGCCG AAGCCGTCAA GTACCTCAAT
ATGGCGAGAA AGAGTGACCC GGCGTTCCTG CCGGCCCGGT TCAATCTGGC AACCTATCAC
GCCTCCACCG GAGATCTGGA TGGGGCAATA GCCGAGTATT CCCGCATGGT TCAGGAATAT
CCCCATAACC TCAGGGCAAT TCTCGGACTC GCTTCCCTGT CTGAATTGAA GGGAAGGGAA
AGTGATGCTC TTGCCTGGTA CACCAAGGCC CGGGATACGG GCGAGTATGC CGGCTATCTC
TCTCTTGCCG GTTACCATGA GAAAAAGGGG AACCTCGACA AGGCCCTTGC CGTGCTGGAC
GATGCTGTCA AGGCAAAGCC CCGCGCGGCA GAGGCGTTCG TAATGAAAGG ACGGATTCTC
CTCGCTCAGA AAAAAGGGAA AGACGCAATC AGAGTTTTCA CCGACCTGGA ATCGATTGCC
CCCGAGCAGG GGCTTGCCCT GAAAGTGGCG GCCTTCGTTC AGATGAAGGA GTCTGCAAAG
GCCATCGAAG AGGCGCGCCG TGCCGTGACA CTCAAGCCTG GCGCCGCCTT TGGTCATTCG
ATTCTCGCGT CGGTCTATGC GGAACAAGGG GATCTCCCGC GGGCAATTCA GGAGGTGAAA
GCCGGCCTCA GGGCAGAACC CGGCAATATC GGGGCTGCCA TGCAACTGGG AGAGTATCTC
GGCCGCAGCG GCAATACCGC CGCCGCCATG GCGCAGTACG AAGCCGTCCT CAGAAACAAC
CCCAACCATG CTCCGGCCCT TTTTGCCCAG GGTATGCTCC TGGAAATGGG CGGCAAAAAG
CGGGAGGCCG TAACGAAGTA CCGGCAGACC CTGGAGAAGG CCGAATCCTT CGCGCCTGCT
CTCAACAACC TGGCGTTTCT TTACGCCGAG GGCTACGGTC CCCGTGAAGA GGCCCTCCGC
ATGGCGCTTA CCGCTCTCAA GCAGGAACCT GCCAATGCTG CCATTGCCGA TACCTACGGT
TACGCCCTCG TGAAAAACGG CCGGGCCGGC GAGGCCGTAA AGATTCTGGA AAAAGTGGTC
AAACTCATGC CGTCAAATCC GGCGGTTCGC TACCACCTGG CGCTTGCCTA TCGCGACACG
GGCGATCGTG CCCGCGCTGC GACGACTCTC CAAGAGGCTC TCAATCAGGG GGACTTCCCC
GAGTCCGGCC AGGCGCGCAT CATGCTCGCC GAGCTTTCCG GTGCTGCTGG AACGGTGAAA
AAAGGGAAAT ACTGA
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| Protein sequence | MKLLQEGNPG GAVVLFKSAL EKDQNFQDAR YQLAKAYQAL GKYEQAEKEY LKVLKQNPSK
TDIVLELAKL YNSQRKPDQA VEQAGKYLQS NPGSAEALEV LGLGYALKGM PAEAERNFLL
ALEKEPRRTS AKLQLAVLLM EQKSSREKEA RALIDEILTA DPGNVKAHNL LASYELSLGN
REQALEIYRK VAALTPGDPA PLYRQGVILL EKGEMDKAEK TAETLVQKFP QKSEGARLKG
LIAYQRKNYA DAITALQTSV KIAPSLEGLY YLGLSMYSRG ELENALSQFR RILDHTPDFV
QARLLTALIL LNQKRVDDAI AEANRAIETD SRSALARNIL GSAYLAKGMY DEGIRELNRA
TELDPKIVDA HLKKGIFNLS KGRVREAESD FTTAVRVAPE MLNSRLVLAF HYMRQHRSDR
ALATLKEGLT GTKGDASLYN TMAAIMFNER KPAEAVKYLN MARKSDPAFL PARFNLATYH
ASTGDLDGAI AEYSRMVQEY PHNLRAILGL ASLSELKGRE SDALAWYTKA RDTGEYAGYL
SLAGYHEKKG NLDKALAVLD DAVKAKPRAA EAFVMKGRIL LAQKKGKDAI RVFTDLESIA
PEQGLALKVA AFVQMKESAK AIEEARRAVT LKPGAAFGHS ILASVYAEQG DLPRAIQEVK
AGLRAEPGNI GAAMQLGEYL GRSGNTAAAM AQYEAVLRNN PNHAPALFAQ GMLLEMGGKK
REAVTKYRQT LEKAESFAPA LNNLAFLYAE GYGPREEALR MALTALKQEP ANAAIADTYG
YALVKNGRAG EAVKILEKVV KLMPSNPAVR YHLALAYRDT GDRARAATTL QEALNQGDFP
ESGQARIMLA ELSGAAGTVK KGKY
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