Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | GSU1764 |
Symbol | dxs-2 |
ID | 2686761 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Geobacter sulfurreducens PCA |
Kingdom | Bacteria |
Replicon accession | NC_002939 |
Strand | - |
Start bp | 1926084 |
End bp | 1927964 |
Gene Length | 1881 bp |
Protein Length | 626 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 637126444 |
Product | 1-deoxy-D-xylulose-5-phosphate synthase |
Protein accession | NP_952814 |
Protein GI | 39996863 |
COG category | [H] Coenzyme transport and metabolism [I] Lipid transport and metabolism |
COG ID | [COG1154] Deoxyxylulose-5-phosphate synthase |
TIGRFAM ID | [TIGR00204] 1-deoxy-D-xylulose-5-phosphate synthase |
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Plasmid Coverage information |
Num covering plasmid clones | 1 |
Plasmid unclonability p-value | 0.0479282 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTCTCGTA TTCTCGACAG GGTAGATTCT CCCTCTGACC TGAAGGGGCT CACTACGGCC GAGTTGGGCA TCCTTGCAGA GGAGATACGG CAGGAAATCA TAACCGTCTG CTCCCGCAAC GGCGGTCACC TGGCGCCGAG TCTCGGCGTG GTGGAGCTTA CTCTGGCCCT GCATAGGGTA TTCACCTCGC CTGAGGATAA AATCGTCTGG GACGTGGGAC ACCAAGCCTA TGCCCACAAA CTCGTGACCG GCCGCCGGGA CCGGTTCGCA ACCCTGCGGA CCCTTGGAGG GATCAGCGGC TTCCTCAAGC GGGCCGAGTC GCCCCACGAC GTGTTTGACG CCGGCCATGC CTCCACTTCC ATATCCGCCG CCCTGGGGCT TGCGGCGGCC CGTGACCTCG CCGGCAGGAA CAACAAGGTA GTGGCGGTCA TCGGCGACGG CTCCATGACC GGCGGTATCG CCTATGAAGG GCTCAACCAC GCGGGGCACC TGAACCGTGA TCTGGTCGTG GTTCTGAACG ACAACGAGAT GTCCATCGCC GAGAACGTGG GCGCTCTGTC CAATTTTCTG AGCCGTACCG TTACCAGCGA GTTCGTTCAT ACCCTGAAGA AGGATGTGGA AACCTTTCTC GGGGGGCTCG ACCGGATCGG CCGGAACGTC CTCAAGGTGG CCAAACGGGC GGAAGAGTCT CTCAAGGGAC TCTTTACGCC GGGAATGCTC TTCGAAGCCT TCGGGTTCGA GTATATCGGC CCCATCGACG GACACGACAT CGGCCGCCTC ACGGAAACCT TCGAAAAGGT CAAGCGGTTC GATGATGCGG TCCTGATCCA CGTTCTGACC AAAAAGGGAA AGGGGTTTGC CCCGGCCGAA GCCAAACCGT CGCTTTTCCA CGGGGTCGGC CCCTTTGACC CTGTCAGCGG CGAAATCGTA AAAGGAAAGG GCGGGGCCAC CTCCTACACG GGAGTCTTCG GCCAGGCCCT GACGCGGATT GCCGATGAAG ACGAGCGGGT AGTCGCCATC ACTGCGGCCA TGCCCGACGG TACGGGCCTC GGCTCCTTCT CGGCTCGCCA CCCCGGTCGC TTCTTCGATG TGGGGATCGC GGAGCAGCAT GGCGTAACCT TTGCCGCCGG CCTCGCGGCC GAGGGGTACC GGCCGGTTTT CGCCATTTAC TCTTCGTTCC TGCAGCGGGC CTATGACCAG CTTTTCCACG ATGTCTGCCT CATGAACCTG CCGGTGACCT TTGCCATTGA CCGGTCCGGG GTCGTGGGAA GCGATGGTCC GACCCACCAC GGGCTCTTTG ACCTGTCCTA CCTGCGTACC CTGCCCAACA TGGTCGTAAT GGCCCCCAAG GATGAAAACG AGCTGCAACA CATGCTCAAG ACCGCCATCG ACCATAATGG CCCCGCAGCG GTCCGCTATC CCCGCGGCAA TGGGCTCGGC GTGCCCCTTG ACCAGTCGCT GGCTCCGATC CCCCTGGGCA CGTCGGAAGT GCTGCGTGCC GGCAGCGGCA CCTGTGTGGT TCTGGCGGTC GGCGCCATGG TCGGGCCCGC CCTCGAAGCG GCTAACACCC TTGAAGGCGA GGGCATTGAC CTGACCGTGG TCAACGTCCG TTTTGTGAAA CCCCTCGACC GGGAGCTTAT CCTGTCGTAC GTCGGCCGGG CCGGAACGCT GGTGACTATT GAGGAAAACG TCCTTCAAGG GGGCTTTGGT TCAGCCGTGC TCGAACTGCT TGCCGATGAA GGAGTAGGAG GCGTTGCCGT GCACCGGTTC GGCTACCCCG ACCGGTATGT GGAGCAGGGT GAACAACATG AACTGCGGTC ACGCTACGGC CTCGATGCCG AGGGGATTGC CGGACGGATC AGGACGTTGT CCGCGCGCTA G
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Protein sequence | MSRILDRVDS PSDLKGLTTA ELGILAEEIR QEIITVCSRN GGHLAPSLGV VELTLALHRV FTSPEDKIVW DVGHQAYAHK LVTGRRDRFA TLRTLGGISG FLKRAESPHD VFDAGHASTS ISAALGLAAA RDLAGRNNKV VAVIGDGSMT GGIAYEGLNH AGHLNRDLVV VLNDNEMSIA ENVGALSNFL SRTVTSEFVH TLKKDVETFL GGLDRIGRNV LKVAKRAEES LKGLFTPGML FEAFGFEYIG PIDGHDIGRL TETFEKVKRF DDAVLIHVLT KKGKGFAPAE AKPSLFHGVG PFDPVSGEIV KGKGGATSYT GVFGQALTRI ADEDERVVAI TAAMPDGTGL GSFSARHPGR FFDVGIAEQH GVTFAAGLAA EGYRPVFAIY SSFLQRAYDQ LFHDVCLMNL PVTFAIDRSG VVGSDGPTHH GLFDLSYLRT LPNMVVMAPK DENELQHMLK TAIDHNGPAA VRYPRGNGLG VPLDQSLAPI PLGTSEVLRA GSGTCVVLAV GAMVGPALEA ANTLEGEGID LTVVNVRFVK PLDRELILSY VGRAGTLVTI EENVLQGGFG SAVLELLADE GVGGVAVHRF GYPDRYVEQG EQHELRSRYG LDAEGIAGRI RTLSAR
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