| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | GSU1576 |
|---|
| Symbol | |
|---|
| ID | 2685228 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Geobacter sulfurreducens PCA |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_002939 |
|---|
| Strand | + |
|---|
| Start bp | 1727617 |
|---|
| End bp | 1728423 |
|---|
| Gene Length | 807 bp |
|---|
| Protein Length | 268 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 637126255 |
|---|
| Product | short chain dehydrogenase/reductase family oxidoreductase |
|---|
| Protein accession | NP_952627 |
|---|
| Protein GI | 39996676 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
|---|
| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.29701 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGAAGAC TTGAAGGCAA GATTGCGCTG GTCACCGGCG CGGCAAGGGG GATAGGGGAG
GCGATTGCCC GTGCCTTCGC AACCGCCGGG GCATTTGTCT ATCTGACAGA CATCAATGAT
GCACAGGGAG CGGTCGTTGC CGGACAAATA GGAGCGGAAG CGGCCTATCG CCGCCTGGAT
GTCCGGGAGG AGGCTGACTG GCAGTGTGTC ACCACGGAGA TTACCGGCCG GCATGGCAGG
CTCGATATTG TGGTCAATAA CGCGGGGATA ACCGGCTTTG AGGACGGAAT GGTCGCGCAC
GACCCTGAGC ATGCCAGTTT GGACAGTTGG CATGCAGTAC ATCGGACCAA TCTCGACGGT
GTCTTTCTAG GATGCAAATA TGCCATCCAG GAAATGCGCA GAACAGGTAC CGGGTCGATC
ATCAATATTT CGTCGCGTTC CGGGTTGGTC GGCATACCCG CCGCTGCCGC CTATGCGTCG
TCCAAGGCTG CTGTGCGCAA CCACACCAAA ACGGTCGCAC TCTATTGCGC GGATCAGGGC
CTTGCCATTC GCTGCAACTC TCTGCACCCT GCCGCAATTC TCACCCCCAT GTGGGAACCC
CTCATTGGGC CGCCGGGGGC GGAGCGGGAG CAACGGATGA AGGAATTCGT TTGGGATACG
CCGCTCAGGA GGTTCGGTAC TCCGGAGGAG ATTGCCGCAG TGGCTCTCCT GTTGGCCTCG
GACGAGGTCA CATACATGAC CGGCAGCGAA ATAACCATTG ACGGAGGAAT CCTTGCTGGT
TCGGTGGCAA GGCCGAGTGT AGATTAG
|
|---|
| Protein sequence | MRRLEGKIAL VTGAARGIGE AIARAFATAG AFVYLTDIND AQGAVVAGQI GAEAAYRRLD
VREEADWQCV TTEITGRHGR LDIVVNNAGI TGFEDGMVAH DPEHASLDSW HAVHRTNLDG
VFLGCKYAIQ EMRRTGTGSI INISSRSGLV GIPAAAAYAS SKAAVRNHTK TVALYCADQG
LAIRCNSLHP AAILTPMWEP LIGPPGAERE QRMKEFVWDT PLRRFGTPEE IAAVALLLAS
DEVTYMTGSE ITIDGGILAG SVARPSVD
|
|---|
| |