| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | GSU1482 |
|---|
| Symbol | |
|---|
| ID | 2686174 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Geobacter sulfurreducens PCA |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_002939 |
|---|
| Strand | - |
|---|
| Start bp | 1622483 |
|---|
| End bp | 1623763 |
|---|
| Gene Length | 1281 bp |
|---|
| Protein Length | 426 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 637126158 |
|---|
| Product | outer membrane efflux protein |
|---|
| Protein accession | NP_952533 |
|---|
| Protein GI | 39996582 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG1538] Outer membrane protein |
|---|
| TIGRFAM ID | [TIGR01844] type I secretion outer membrane protein, TolC family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.979092 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAACCAC TACCAATCCG TAGCATCCCC TTCCTGATCC TTGCGCTCTG TGCAGCGACG
CCGGCCATGG CCAGCGCGCT TTCACTCAAA GAATGCCTGA GTCTGGCCGC GGCCGGCAAC
TACTCGCTGG CCGTAACAGC TTCCGACCGC CTTATCGCGC AAGAGGCGAT CACCCAGGCC
CGAAGCGGCT TTCTCCCGCG CGTGGACTTC CAGGGCGGGT ACACCCTCCA GGCAAAGCCC
CAGGCGGTGA ATTTCGGCGA ACGGGGCAGC ATTGAGACCC AGGACGGCAC CTATGGATTC
TTCAACCTCT CCGTGACCCA GACCATCTAT GATTTCGGCC GCACCTCCTC GCGCCGGCAG
CGGGCGTCCC TCCTCCACGA GGCGACTGCC CAGCAATACG CAGCGGCCGA GAAAGACGTA
TTCCTCCAGG TTGTCGAGGC CTATTTCGGC ATCCTCGAAG CACGGCGCCT CCTCGGCACC
GCCGAGGAGG AAGTGGCCCA GCGAACCGAC CATCTGCGGA TCGCCACCAA TCTCTTCGAA
CAGGGGGTGG TCACCCGCAA CGACCTGCTC CAGGCCCAGG TCAGACTGGC GGAAAGCTCC
CAGAAGCGCC TGGTGGCGGC AAATCGTCTC GAAAACCGCT GGATGTACCT GAATCACCTG
ACCGGAAGAC CTCTCGATCA GCGTGACGAG CTTGAAGAGG GAACTGAATC CGCCATGCCC
GATACCGCCG GGGCCGAAGA ACGCGCCTTT GCCAATCGTC CCGAACTGAC TGCCCTTGCG
CGAAGCGCAG ACGCCGCCGA TGCAGAAGTT TCCGAGGCCA GGAGCGGTTA CTACCCCGAA
CTCTATGCCA AGGCCGGTGT CGACTACGTG GAGAACAGCA AGGTGCGCGA GCAGGCAATC
TATGCCGCAA CGGTGGGGCT GAAGATCAAT CTCTTCGAAG GCTTCGCCAC GGAATCCAGG
CACCGGCAGT CAGTCGAGCG CCTCACCAGG AGCCGCGATG CGTTGCGACT GGCGCGGGAA
CAGGTCCGGC TCGAGCTTGC CACTGCCCTG AACGATGCCC GGGTGGCGGA ACAGCGGATC
AAGAGCGTCG AAACGGCAAT CCGCCAGGGA GAAGAAAACC TGAGGATCAA TAGGGACCGC
TACCAGGCTC AGGTCGGCAC GGCCACTGAT GTGCTCGATG CCCAGACACT GCTTACCCAG
ATAAAGACCG ATTATCACCG GGCCGTTTTC GACTTCCAGG TCGCAAAGGC CCGTGTCAGC
AAAGCCATGG GAGAACTGTA G
|
|---|
| Protein sequence | MKPLPIRSIP FLILALCAAT PAMASALSLK ECLSLAAAGN YSLAVTASDR LIAQEAITQA
RSGFLPRVDF QGGYTLQAKP QAVNFGERGS IETQDGTYGF FNLSVTQTIY DFGRTSSRRQ
RASLLHEATA QQYAAAEKDV FLQVVEAYFG ILEARRLLGT AEEEVAQRTD HLRIATNLFE
QGVVTRNDLL QAQVRLAESS QKRLVAANRL ENRWMYLNHL TGRPLDQRDE LEEGTESAMP
DTAGAEERAF ANRPELTALA RSADAADAEV SEARSGYYPE LYAKAGVDYV ENSKVREQAI
YAATVGLKIN LFEGFATESR HRQSVERLTR SRDALRLARE QVRLELATAL NDARVAEQRI
KSVETAIRQG EENLRINRDR YQAQVGTATD VLDAQTLLTQ IKTDYHRAVF DFQVAKARVS
KAMGEL
|
|---|
| |