Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | GSU0688 |
Symbol | shc-1 |
ID | 2687053 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Geobacter sulfurreducens PCA |
Kingdom | Bacteria |
Replicon accession | NC_002939 |
Strand | - |
Start bp | 725430 |
End bp | 727469 |
Gene Length | 2040 bp |
Protein Length | 679 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 637125360 |
Product | squalene-hopene cyclase |
Protein accession | NP_951745 |
Protein GI | 39995794 |
COG category | [I] Lipid transport and metabolism |
COG ID | [COG1657] Squalene cyclase |
TIGRFAM ID | [TIGR01507] squalene-hopene cyclase [TIGR01787] squalene/oxidosqualene cyclases |
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Plasmid Coverage information |
Num covering plasmid clones | 1 |
Plasmid unclonability p-value | 0.0586149 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAAATCT CAAAAAATCC CATTTCGCAC GCACTCACTT CGTTCAATGA TGCGGCACGG GAAACAGCTG ACAATAGTGC CGCACGCAAG TCGGGGAAAA TCCACCACCT CCCCGCCACC ATTTGGAAAA AAAAGGAATC GACGGTATCG AGCCCTCTCG ATATAGCTAT CGAGCGGACC CAGGAATTCT TTTTCCGCGA GCAGCTCCCC GCCGGCTACT GGTGGGCCGA GCTGGAATCC AACGCTACTA TAACCGCCGA ATACATCATG CTGTTCCACT TCATGGGGCT GGTTAACCGT GAAAAAGAGC GGAAGATGGC CAATTACCTT CTCCGCCAGC AGACTACGGA GGGCTACTGG ACCATCTGGC ACGGCGGTCC CGGCGACCTT TCCACCACAA TCGAGGCCTA TTTCGCCCTG AAGCTCGCCG GCTACCCGGC CGATCATCCG TCCATGAGCA AGGCCCGGGC GTTCATCCTA GAGCACGGCG GCATCCTCAA GGCGCGGGTC TTCACCAAGA TATTCCTTGC CCTGTTCGGG GAGTTCTCCT GGCTGGGGGT TCCCTCCATG CCCATCGAGA TGATGCTGCT CCCCGCCGGC TTCACCTTCA ACATGTACGA GTTTTCCAGC TGGTCACGGG CAACGATCAT CCCCCTCTCC ATCGTCATGG CGGAGCGGCC GGTGCGCAAG CTGCCCCCCT GGGCCCGGGT GCAGGAGCTT TACGTGCGCC CCCCGCGGCC CACGGACTAT ACCTTCACCA AGGAAGACGG TATCCTCACC TGGAAGAACA TCTTCATCGG CATCGACCAC GTACTGAAGG TGTACGAGGC GAGCCCCATC CGGCCGGGCA GGAAGAAAGC CATGGCCATC GCCGAGAAGT GGGTGCTCGA GCACCAGGAG CCCACCGGCG ACTGGGGGGG CATCCAGCCC GCCATGCTCA ACTCGGTGCT GGCGCTCCAC GTACTCGGTT ACGCCAACGA CCATCCGGCC GTGGCCAAGG GGCTGCAGGC CCTGGCCAAC TTCTGCATCG AGGGTGAGGA CGAACTGGTC CTCCAGTCCT GCGTCTCGCC GGTATGGGAT ACGGCCCTGG GCCTCATGGC CATGGTCGAC TCGGGAGTCC CCACCGATCA CCCTTCCCTC TCCAAGGCGG CCCAATGGCT TCTGGACCGT GAAGTCCGCA GGCCGGGCGA CTGGAAGATC AAGTGTCCCG ATCTGGAGCC CGGCGGCTGG GCCTTCGAGT TCATGAACGA CTGGTATCCC GATGTGGACG ACTCGGGTAT CGTCATGATG GCCATCAAAA ACGTGAAGGT TAAGGACCAG CGGGCCAAAG AGGACACCAT CACCCGCGGC ATCGCCTGGT GCCTGGGCAT GCAGAGCAAG AACGGCGGCT GGGGGGCCTT TGACAAGGAC AACACCAAGC ACATCCTCAA CAAGATCCCC TTCGCCGACC TGGAGGCCCT CATCGACCCC CCCACGGCGG ATCTGACCGG CCGCATGCTG GAGCTCATGG GGACCTACGG TTATCCCAAG GACCACCCAG CGGCGGTCAG GGCGCTGAAG TTCATCCGTG AGACCCAGGA ACCCGACGGT CCCTGGTGGG GACGGTGGGG GGTAAATTAC ATCTACGGCA CTTGGTCGGT CATGTCCGGA CTTGCCGCCT TTGGCGAAGA CATGAGCCAG CCTTGGATCC GCAAGGCCGT GGACTGGCTC GTGGAGCACC AGAACGAAGA CGGCGGCTGG GGCGAGTGTT GCGAGTCGTA CGCCGATCCC CGGCTGGCCG GCGTCGGGCC CAGCACGGCG TCTCAGACAG GATGGGCCCT TCTCACGCTC CTTGCCGCCG GCGAGGTGGC AAGCTCGTCC GTGGTGCGGG GAGTCCAGTA TCTCCTCGAC ACCCAGAAGC CCGACGGGAC CTGGGACGAG GACGCCTTCA CCGGCACGGG CTTCCCGAAA TTTTTCATGA TCAAGTACCA CATCTACCGG AACTGCTTCC CTCTCATGGC GCTGGGACGC TACCGGACGC TTGCGGGCAA AGGGCTCTGA
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Protein sequence | MKISKNPISH ALTSFNDAAR ETADNSAARK SGKIHHLPAT IWKKKESTVS SPLDIAIERT QEFFFREQLP AGYWWAELES NATITAEYIM LFHFMGLVNR EKERKMANYL LRQQTTEGYW TIWHGGPGDL STTIEAYFAL KLAGYPADHP SMSKARAFIL EHGGILKARV FTKIFLALFG EFSWLGVPSM PIEMMLLPAG FTFNMYEFSS WSRATIIPLS IVMAERPVRK LPPWARVQEL YVRPPRPTDY TFTKEDGILT WKNIFIGIDH VLKVYEASPI RPGRKKAMAI AEKWVLEHQE PTGDWGGIQP AMLNSVLALH VLGYANDHPA VAKGLQALAN FCIEGEDELV LQSCVSPVWD TALGLMAMVD SGVPTDHPSL SKAAQWLLDR EVRRPGDWKI KCPDLEPGGW AFEFMNDWYP DVDDSGIVMM AIKNVKVKDQ RAKEDTITRG IAWCLGMQSK NGGWGAFDKD NTKHILNKIP FADLEALIDP PTADLTGRML ELMGTYGYPK DHPAAVRALK FIRETQEPDG PWWGRWGVNY IYGTWSVMSG LAAFGEDMSQ PWIRKAVDWL VEHQNEDGGW GECCESYADP RLAGVGPSTA SQTGWALLTL LAAGEVASSS VVRGVQYLLD TQKPDGTWDE DAFTGTGFPK FFMIKYHIYR NCFPLMALGR YRTLAGKGL
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