| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | GM21_3335 |
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| Symbol | rpoB |
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| ID | 8138697 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Geobacter sp. M21 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012918 |
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| Strand | - |
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| Start bp | 3860662 |
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| End bp | 3864777 |
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| Gene Length | 4116 bp |
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| Protein Length | 1371 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 644870948 |
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| Product | DNA-directed RNA polymerase subunit beta |
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| Protein accession | YP_003023118 |
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| Protein GI | 253701929 |
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| COG category | [K] Transcription |
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| COG ID | [COG0085] DNA-directed RNA polymerase, beta subunit/140 kD subunit |
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| TIGRFAM ID | [TIGR02013] DNA-directed RNA polymerase, beta subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 34 |
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| Fosmid unclonability p-value | 0.000000341705 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGGCTTATT CAATCGCGAA TAACCCCCTG TTGCGCAAGA ACTTCGCCAA GATCCACAAG
ATCATCGACA TACCGAACCT CATCGACATC CAGAAAAATT CCTACAAGAG ATTCCTCCAA
CTCGACACAC CCGTAGACGC ACGCAAGAAT TCCGGCCTGG AGGCCGTTTT CCGCAGCGTC
TTCCCGATCA GGGACTTCAG CGACACCGCT TCGCTTGAGT ACGTTTCGTA TTCGCTCGGC
GCGCCGAAGT ACGACGTGGA GGAGTGCCAC CAAAGGGGCA TGACCTTCGC GGCCCCGATG
AAGGTGAAGG TGAGGCTGGT GGTGTGGGAT GTGGCGAAGG ACCCCGGTAC CCGATCGATC
CGCGACATCA AGGAGCAGGA GGTTTATTTC GGCGAAATCC CGCTGATGAC CGACAACGGG
ACCTTTATCA TAAACGGCAC CGAGCGCGTC ATCGTGAGCC AGCTGCACCG CTCTCCGGGC
GTTTTCTACG ACCACGACAA GGGGAAGACC CACTCCTCCG GGAAGGTGCT CTACTCCGCT
CGCGTGATTC CGTACCGCGG CTCGTGGCTT GACTTTGAAT TTGACCATAA AGACATCCTT
TATGTTCGCA TAGACAGACG GCGCAAGATG CCGGCCACCG TGCTCCTCAA GGCGCTCGGC
TACTCCAACG ACGCGCTGAT CAACTATTTC TACAAGTCCG AGGACGTCAA GGTCGGCGAC
AACGGCTCCA TGACCAAGAT CGCGGACGCG GAACTGCTCT CCAACCAGAA GGCCACCGCG
GACATCGTGG ACCCGGCTAC CGGCGAGGTG ATCCTCAAGG CGAACCGCAA GTTCACCAAG
GCCGCCATCC GCAAGATGTC CGAGCATGGG ATCAAGGAGA TCCCCATCTC CGAGGAGGAG
GTGGTAGGGA AGGTCGCCTC GCACGACATC TACGACCCGG CCACCGGCGA GATCATCGTT
GAGTGCAACG AGGAATTAAC GCAGGCCAAA CTCGAGGAGA TCATCCAGAA GGGGATCACC
ACCTTCCAGG TGCTTTTCAT CGACAACCTG CACGTCACCT CCAGCTTCCG CGACACCATC
CTGATCGACA AGATCGGCTC CACCGACGAG GCGCTGATCG AGATCTACCG CCGTCTGCGT
CCGGGCGACC CGCCGACACT CAAGAGCGCG CTGGTTCTCT TCGAGAACCT GTTCTTCAAC
GCGGAGCGCT ACGACCTCTC CGCCGTCGGC CGCCTGAAGC TCAACTACAA GCTGGGCGTC
GACGTGCCGC TTGACTGCAT GACGCTCACC CGCGAGGACA TCCTCGAGGT GGTGCGCTAC
CTGATCGAGC TGAAAAACGG CAAGGGGAAC ATCGACGACA TCGACCACCT GGGCAACCGC
CGTGTTCGCG CCGTGGGCGA GCTTCTGGAA AACCAGTACC GCATCGGCCT GGTCAGGATG
GAGCGCGCCA TCAAGGAGCG CATGAGCCTG CAGGAAGTCG AGAACCTGAT GCCGCACGAC
CTGATCAACT CCAAGCCGGT CTCCGCGGTG GTGAAGGAGT TCTTCGGCTC CTCGCAGCTC
TCCCAGTTCA TGGACCAGAC CAACCCGCTC TCCGAGGTCA CGCACAAGCG TCGTCTCTCG
GCCCTGGGAC CGGGGGGCTT GACCCGCGAG CGCGCGGGCT TCGAGGTCCG CGACGTTCAT
CCGACCCACT ACGGCCGCGT CTGCCCGATC GAGACCCCTG AGGGTCCGAA CATCGGTCTC
ATCGCGTCGC TCTCCACCTA CGCCAGGATC AACGAACACG GCTTCGTCGA GACGCCGTAC
CGCGTGGTCA AGGAAGGGCG CGTCACCGAC GAGGTCCGCT TCTTCTCCGC TTTGGAGGAG
GAAGGTCACG CCATCGCCCA GGCCAACGCC GAGATCGACG AGACCGGGCG CTTCGCCGCC
GACTACATCT CGGCCAGAAA GTCCGGCGAG TTCGTCCTCG TGGGACGCGA CGAGCTGGAA
CTCATGGACG TGGCGCCGAT GCAGCTTGTC TCCGTCGCGG CATCGCTGAT CCCGTTCCTC
GAGAACGACG ACGCGAACCG CGCACTGATG GGCTCCAACA TGCAGCGCCA GGCAGTGCCG
CTTTTGCGCG CCGACTCCCC GCTGGTAGGT ACCGGCATGG AGAGGGTCGT GGCGAGGGAC
TCCGGGGTCT CCCTGGTTGC CCGCCACAAC GGCGTGGTCG AATCGGTCGA CGCCTCCAGG
ATCGTCGTGA AGATCGACGA GGATCAGTAC GACGCGACCG GCACCGGCGT CGACATCTAC
AACCTGATCA AGTTCGCCCG TTCCAACCAG AACACCTGCA TCAACCAGAG GCCGCTCGTC
AAGGTGGGCG ACCACGTCAC CGCCGGCGAC ATCATCGCCG ACGGCCCCTC CACCGACATG
GGGGAACTGG CTCTGGGACA AAACGTGCTG ATCGCGTTCA TGCCGTGGGG CGGCTACAAC
TACGAGGACT CCATCCTCAT CTCGGAGCGC CTGGTAAAAG ACGACCGCTA CACCTCGATC
CACATCGAGG AGTTCGAGGC GGTGGCGCGC GACACCAAGC TCGGCAAGGA GGAGATCACC
TCCGACATTC CGAACCTGGG CGAAGAGACC CTGAAAGACC TGGACGAGTC CGGCATCATC
AGGATCGGCG CCGAGGTCCG TCCGGGCGAC ATCCTGGTCG GCAAGATCAC CCCGAAGGGC
GAGACCCAGC TTTCCCCTGA AGAGAAACTC TTGCGCGCCA TCTTCGGCGA GAAGGCGGGC
GACGTCCGCG ACACCTCGCT CAGGGTGCCG CCGGGGGTCG AAGGGACCGT CATCGGCGCC
AAGATCTTCT CGCGTAAAGG CGCCGACAAG GACGCCCGTA CCGAGATCAT CGAGAAGGCC
GAGGAGATGC GTCTCAGGAA AGACGAGCAG GACGAGATCC GGATCATCCG CGATTCGGCT
ATCGGAAAAC TGAAGAAGCT CTTGGTTGGG AAAACCGCCG CAGTGAAGAT AGAAGGGACC
GACGGCAAGG TGCTCATCCC GAAAGGGGCG GCCATCACCG AGGAGATGCT GAAATCGTTC
TCCATGGACC GCTGGGACGA GATCTCCATC GCCGACGACG ACACCGTGGA CGAGAAGGTA
GCGCAGACGC TCTCCACGCT GAACCAGCAG ATCGACATCA TCAAGTACGT CTTCGACGAC
AAGGTGCAGA AGCTGCGCCG CGGCGACGAT CTCCCCCCGG GCGTCATCAA GATGGTCAAG
GTGTACATCG CCATCAAGAG GAAGCTGCAG GTGGGCGACA AGATGGCAGG ACGTCACGGT
AACAAAGGTG TCGTCTCCAG GATCCTGCCG GAAGAGGATA TGCCGTACAT GGAGGACGGG
CGTCCCGTCG AGATCGTGCT GAACCCGCTG GGCGTACCTT CCCGTATGAA CGTCGGGCAG
ATCCTTGAGA TGCACCTCGG CTGGGCCGCC AAGGGGCTCG GCTGGAAGAT AGAGGAATTC
CTCGACAAGA ACGCCCCGCA CGACGAGATC AAGAGGTTCC TGAAGGGGGC TTACAACAAC
CCGGACATGG ACCGCTTCCT CGACAAGCTG GAGGGGGAGG AGCTCCTCAA CGTGGCGAAG
CGCCTCAAGC GCGGCGTCCC GATGTCGTCG CCGGTCTTCG AGGGGGCGAG CGAGGAATCG
ATCCAGTCGA TGCTGAGCCA CGCCGGCTTC AGCACCACCG GGCAGGTCAC CCTATTCGAC
GGCAAGAGCG GCGACAAGTT CATGCATCAG GTCACCGTCG GCATCATGTA CTTCCTGAAG
CTGCACCATC TGGTCGACGA CAAGATCCAC GCGAGGTCCA TCGGGCCCTA CTCGCTGGTC
ACCCAGCAGC CGCTGGGGGG CAAGGCGCAG TTCGGCGGGC AGAGGCTCGG GGAGATGGAG
GTCTGGGCGA TGGAGGCCTA CGGCGCGGCG TACGCGCTGC AGGAATTCCT CACCGTCAAG
TCCGACGACG TGGCCGGCCG CACCAGGATG TACGAGGCGA TCGTCAAAGG AAAGCACACG
CTGGAGCCCG GTCTGCCGGA ATCGTTCAAC GTCCTCATCA AGGAACTCCA GTCCCTTGGC
CTCGACGTGG AACTTCTGGA AGGCGACGAG GACTAG
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| Protein sequence | MAYSIANNPL LRKNFAKIHK IIDIPNLIDI QKNSYKRFLQ LDTPVDARKN SGLEAVFRSV
FPIRDFSDTA SLEYVSYSLG APKYDVEECH QRGMTFAAPM KVKVRLVVWD VAKDPGTRSI
RDIKEQEVYF GEIPLMTDNG TFIINGTERV IVSQLHRSPG VFYDHDKGKT HSSGKVLYSA
RVIPYRGSWL DFEFDHKDIL YVRIDRRRKM PATVLLKALG YSNDALINYF YKSEDVKVGD
NGSMTKIADA ELLSNQKATA DIVDPATGEV ILKANRKFTK AAIRKMSEHG IKEIPISEEE
VVGKVASHDI YDPATGEIIV ECNEELTQAK LEEIIQKGIT TFQVLFIDNL HVTSSFRDTI
LIDKIGSTDE ALIEIYRRLR PGDPPTLKSA LVLFENLFFN AERYDLSAVG RLKLNYKLGV
DVPLDCMTLT REDILEVVRY LIELKNGKGN IDDIDHLGNR RVRAVGELLE NQYRIGLVRM
ERAIKERMSL QEVENLMPHD LINSKPVSAV VKEFFGSSQL SQFMDQTNPL SEVTHKRRLS
ALGPGGLTRE RAGFEVRDVH PTHYGRVCPI ETPEGPNIGL IASLSTYARI NEHGFVETPY
RVVKEGRVTD EVRFFSALEE EGHAIAQANA EIDETGRFAA DYISARKSGE FVLVGRDELE
LMDVAPMQLV SVAASLIPFL ENDDANRALM GSNMQRQAVP LLRADSPLVG TGMERVVARD
SGVSLVARHN GVVESVDASR IVVKIDEDQY DATGTGVDIY NLIKFARSNQ NTCINQRPLV
KVGDHVTAGD IIADGPSTDM GELALGQNVL IAFMPWGGYN YEDSILISER LVKDDRYTSI
HIEEFEAVAR DTKLGKEEIT SDIPNLGEET LKDLDESGII RIGAEVRPGD ILVGKITPKG
ETQLSPEEKL LRAIFGEKAG DVRDTSLRVP PGVEGTVIGA KIFSRKGADK DARTEIIEKA
EEMRLRKDEQ DEIRIIRDSA IGKLKKLLVG KTAAVKIEGT DGKVLIPKGA AITEEMLKSF
SMDRWDEISI ADDDTVDEKV AQTLSTLNQQ IDIIKYVFDD KVQKLRRGDD LPPGVIKMVK
VYIAIKRKLQ VGDKMAGRHG NKGVVSRILP EEDMPYMEDG RPVEIVLNPL GVPSRMNVGQ
ILEMHLGWAA KGLGWKIEEF LDKNAPHDEI KRFLKGAYNN PDMDRFLDKL EGEELLNVAK
RLKRGVPMSS PVFEGASEES IQSMLSHAGF STTGQVTLFD GKSGDKFMHQ VTVGIMYFLK
LHHLVDDKIH ARSIGPYSLV TQQPLGGKAQ FGGQRLGEME VWAMEAYGAA YALQEFLTVK
SDDVAGRTRM YEAIVKGKHT LEPGLPESFN VLIKELQSLG LDVELLEGDE D
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