Gene GM21_3054 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagGM21_3054 
Symbol 
ID8138400 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameGeobacter sp. M21 
KingdomBacteria 
Replicon accessionNC_012918 
Strand
Start bp3542354 
End bp3544534 
Gene Length2181 bp 
Protein Length726 aa 
Translation table11 
GC content65% 
IMG OID644870654 
Producthelicase, RecD/TraA family 
Protein accessionYP_003022840 
Protein GI253701651 
COG category[L] Replication, recombination and repair 
COG ID[COG0507] ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member 
TIGRFAM ID[TIGR01448] helicase, putative, RecD/TraA family 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones114 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAAGAGA CACCCCCAAC CGAAAACGTC GACAGGCTCT CGGGCTCGCT GGAGAGGGTC 
ACCTTCCACA GCGAGGAGAC CGGATTCTGC GTGCTGCGGG TGAAGGTTGC CGGGCAGCGC
GACCTGGTGA CGGTGACCGG CGCCGCGGCC TCGGTGACGC CGGGGGAGTA CCTTGAGTGC
ACCGGTTCCT GGCACAACGA CCGGACCCAC GGCATGCAGT TCAAGGCCGG GCACATCAAG
GTGGTCCCCC CCACCACCCT GGAAGGGATC GAGAAGTACC TGGGAAGCGG GATGGTGCAC
GGCATCGGGG CCCACTTCGC CAAGGTGCTG GTGAAATCGT TCGACGCGGC CGTCTTCGAC
GTCATCGAGA ACCACCCGGA AAGGCTCCTG GAGCTTCCGG GGATCGGCCG CAAGCGGATG
GAATCGGTCG CCGGCGCCTG GGTGGAGCAA AAGGCGATCC GCGAGATCAT GGTGTTCCTG
CAGTCCAACG GCCTTGGGAC CGCCCGGGCC GTGAGGATCT ACAAGAGCTA CGGCAACGAG
GCGATCTTCA AGGTGACCGA GAACCCGTAC CGGCTGGCCC TGGAGATCCA CGGCATAGGG
TTCAAGACCG CCGACCTCTT GGCTGCGAAG CTCGGGATAG CGCCCGATTC CATGATCCGG
GCCCAGGCGG GGGTGCGGCA TGTGCTGCAG GAGATGTCGA CCAGCGGCCA CTGCGCCGCA
CTCAGGGCGG AACTGGCCGA AAGCACCGCA AGTTTGCTGG AGATCCCTCA ACCGGTGATA
GAGTCCGCCA TCGAGGCGGA GCTCGCCGCG GAGAACCTGG TCGCCGACCA GATCTCCGGC
TCCCCCTGCG TCTTCCTCGC GCCGCTCTAC AAGGCGGAGG TAGGCGTGGC CTCCGGTATT
TGCCGCCTTC GCGCCGGCAC GCCCCCCTGG GGGGGCATCG TCGCCGAAGA GGCGATTCCC
TGGGTGGAGA GCCAAAAAGG GATCACCCTT TCCGCCTCGC AGCGCGACGC CATTCGGCTC
GCCCTCAAGA GCAAGGTGGT CGTGGTGACC GGCGGGCCGG GGGTGGGTAA GACCACGCTG
GTCAACAGCA TCCTCGGCGT CATCGGCAGA AGGCCGCTCC GGGTCACCCT ATGCGCCCCG
ACCGGGAGGG CCGCGAAGCG CCTCGCCGAG TCGACCGGGA TGGAGGCGAA GACCATTCAC
CGGCTGCTGG AGTTCGATCC GCAGAGTTTC GGTTTCAAGC GCTGCAAGGA GAACCCGCTT
CACACCGACC TCCTGGTCAT GGACGAGGCG TCCATGGTCG ACGTCGTGCT GATGAACAAG
CTCCTTCCCG CCATTCCCGA CCATGCCGGC CTCATCATCG TGGGGGATGT GGACCAACTC
CCGTCGGTGG GGCCGGGGTC CGTTTTATCC GACATCATCG AGTCCGGCGC GGTCCCCACG
GTGCGGCTCA CCGAGATCTT CCGGCAGGCC GCCGGTTCCA GGATCATCGT CAACGCCCAC
CGCATCAATC GCGGCGAATT GCCGCTGAAG GACGAGGGGA AGGAGCTCGC CGACTTCTAC
TTCATACCGG CGGCGACGCC CGAGGACATC CACGACAAGC TCCTGCAGGT CGTCAGGGAG
CGGATCCCCA AGCGTTTCGG CTTCGATCCC GTGCGCGAGG TCCAGGTGCT CACGCCGATG
AACCGGGGGG GGCTCGGGAC CAGGTCCCTC AACGCAGAGT TGCAGGGGGT GCTGAACGGC
AGGGGCGAGC CGAAGGTGGA GCGCTTCGGC ACCAGCTACG CCCCCGGGGA CAAGGTGATC
CAGACGGTGA ACAACTACGA GAAGGAGGTC TTCAACGGGG ACATCGGACG CATCGTCGAG
ATCCGCCCGG AAGAAGGCGC ACTCACCGTG GACTTCGATG ACCGGCTGGT GGAATATGCG
TTCGCCGAAT TGGACGAGGT GAGTCTCGCC TACGCCACCA GCATCCACAA GAGCCAGGGG
TCCGAATACA CCGCCGTGGT GATCCCGCTT GCGATGCAGC ACTACACCAT GCTGGAGCGA
AACCTCCTTT ACACCGCCGT CACCCGCGGC AAAAAGCTCG TGGTGGTGAT CGGCGAGCAG
AAGGCGCTCG CCATGGCGGT GCAAAACCAG AAGTCCCACC GCCGCCTGAC CAGGCTGGCG
GGGAGGATAG CTCTCACGTA G
 
Protein sequence
MKETPPTENV DRLSGSLERV TFHSEETGFC VLRVKVAGQR DLVTVTGAAA SVTPGEYLEC 
TGSWHNDRTH GMQFKAGHIK VVPPTTLEGI EKYLGSGMVH GIGAHFAKVL VKSFDAAVFD
VIENHPERLL ELPGIGRKRM ESVAGAWVEQ KAIREIMVFL QSNGLGTARA VRIYKSYGNE
AIFKVTENPY RLALEIHGIG FKTADLLAAK LGIAPDSMIR AQAGVRHVLQ EMSTSGHCAA
LRAELAESTA SLLEIPQPVI ESAIEAELAA ENLVADQISG SPCVFLAPLY KAEVGVASGI
CRLRAGTPPW GGIVAEEAIP WVESQKGITL SASQRDAIRL ALKSKVVVVT GGPGVGKTTL
VNSILGVIGR RPLRVTLCAP TGRAAKRLAE STGMEAKTIH RLLEFDPQSF GFKRCKENPL
HTDLLVMDEA SMVDVVLMNK LLPAIPDHAG LIIVGDVDQL PSVGPGSVLS DIIESGAVPT
VRLTEIFRQA AGSRIIVNAH RINRGELPLK DEGKELADFY FIPAATPEDI HDKLLQVVRE
RIPKRFGFDP VREVQVLTPM NRGGLGTRSL NAELQGVLNG RGEPKVERFG TSYAPGDKVI
QTVNNYEKEV FNGDIGRIVE IRPEEGALTV DFDDRLVEYA FAELDEVSLA YATSIHKSQG
SEYTAVVIPL AMQHYTMLER NLLYTAVTRG KKLVVVIGEQ KALAMAVQNQ KSHRRLTRLA
GRIALT