| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | GM21_1784 |
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| Symbol | secD |
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| ID | 8137115 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Geobacter sp. M21 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012918 |
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| Strand | + |
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| Start bp | 2074610 |
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| End bp | 2076208 |
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| Gene Length | 1599 bp |
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| Protein Length | 532 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 644869396 |
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| Product | preprotein translocase subunit SecD |
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| Protein accession | YP_003021596 |
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| Protein GI | 253700407 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0342] Preprotein translocase subunit SecD |
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| TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family
[TIGR01129] protein-export membrane protein SecD |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 51 |
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| Fosmid unclonability p-value | 0.00162006 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAAGGGTT ATACCTGGCG CATCTCTTTG ATTCTCCTCT TTATCATCGC CTCGTTCGTC
TACCTGACGC CGACGCTTGT CGACACGCTC CCCTCCTGGT GGAGCGGGCT GCTCCCCAAG
GACAAGATCC ACCTGGGTCT GGACCTTCAG GGGGGTACCC ACCTGGTCAT GGGGGTCGAG
ACCGAGAAGG CCGTCGAGGG GTCGCTTGAC CTGATCGCCA CCGACCTGGA AGACTCGCTC
ACCCAGCAGA ACCTTCGCTA CAAGAACATC CTCCGCGTCG GAAACGACAA GGTGCAGCTC
ACCCTGTACG ATCGCGTCAG CGCCGACGCG GCCCAGGCCC TGATCAAGAA GAAGTACCCC
GACATGCAGA TCCTCCCCGC GACCGATGAA GGGGGCTTCA TCGGGATGCA GATTCGCATC
GACGAGAAAG AGGCCCAGCT GAGGAAGGAC CGCGCCGTGG CCCAGGCCCT TGAGACCATC
CGGAACAGGA TCGACCAGTT CGGCGTCTCC GAGCCGGTGA TCCAGCGCGA GGGGCTGACC
AACATCGTGG TGCAGCTCCC GGGCATCAAG GATCCCAAGC GCGCCATCGA CCTGATCGGC
AAGACCGCCC GCCTGGAATT CAAGCTGGTG GACGAGACCA TCAACGCCGC CACCGCCACA
GCTTCCAGCA TCCCGGCAGA CGACGAACTC CTTTACGAGA AAAATACCGA CCCCGCCACC
GGTGCGGTCT CCGAGACCCC GATCGTGGTC AAGAAGAAGG CGATCATCAC CGGCGATCTC
CTGACCGACG CGCAGATCCG CATCGACTCC CAGTACAACC AGCCCTACGT CGCCATCGAC
TTCAACTCGA CCGGCGCGAG GCTCTTCGAC CAGGTGACCG CGGCCAACGT AGGGAAGCGT
TTCGCCATCG TGCTCGACAG CAACGTCTAC TCCGCCCCCG TGATCCGCGA GAGGATCTCC
GGCGGCAGCG CCCAGATCTC CGGTTCCTTC ACGGAGAAGG AAGCGGCCGA CCTCGCCATC
GTCTTGCGCG CCGGTTCGCT CCCCGCCCCG GTAAAGATCC TGCAGAACGT GACGGTAGGA
CCTTCCCTGG GCAAGGACTC GATCCGCAAG GGGCTCATGG CCGGTCTCAT CGGCGTTGCC
CTGGTGGTGA GCTTCATGGC GATCTACTAC AAGCTTTGCG GCATGGTCGC CAACTTCGGA
ATGGTGCTCA ACATCCTCTT TCTGATGGGC GCCCTCTCGG CCCTCGGCGC CACGCTCACG
CTCCCCGGCA TCGCCGCTAT CGTCCTTCTG GTCGGTATGT CGGTCGACTC CAACGTTCTC
ATCTTCGAGA GGATCAGGGA GGAGCTGAGG CTCGGCAAGA CGCCGCACGC GGCGGTCGAC
TCCGGCTACG ACAAGGCGTT TCTCACCATC ATGGACTCGC ACGTGACCGC CCTCATCACC
GCGGCGGTGC TCTTCCAGTT CGGCACCGGC CCGGTCAAGG GGTTCGCGGT CTCCCTGAGC
CTCGGCATCA TCATCAACCT TTTCACCTCG CTCGTTACCA CGAGGGTCAT CTTTGACGCC
TACCTGGAGC GTGCCAACGT GAAGAGACTC AGCATATAG
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| Protein sequence | MKGYTWRISL ILLFIIASFV YLTPTLVDTL PSWWSGLLPK DKIHLGLDLQ GGTHLVMGVE
TEKAVEGSLD LIATDLEDSL TQQNLRYKNI LRVGNDKVQL TLYDRVSADA AQALIKKKYP
DMQILPATDE GGFIGMQIRI DEKEAQLRKD RAVAQALETI RNRIDQFGVS EPVIQREGLT
NIVVQLPGIK DPKRAIDLIG KTARLEFKLV DETINAATAT ASSIPADDEL LYEKNTDPAT
GAVSETPIVV KKKAIITGDL LTDAQIRIDS QYNQPYVAID FNSTGARLFD QVTAANVGKR
FAIVLDSNVY SAPVIRERIS GGSAQISGSF TEKEAADLAI VLRAGSLPAP VKILQNVTVG
PSLGKDSIRK GLMAGLIGVA LVVSFMAIYY KLCGMVANFG MVLNILFLMG ALSALGATLT
LPGIAAIVLL VGMSVDSNVL IFERIREELR LGKTPHAAVD SGYDKAFLTI MDSHVTALIT
AAVLFQFGTG PVKGFAVSLS LGIIINLFTS LVTTRVIFDA YLERANVKRL SI
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