| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | GM21_1504 |
|---|
| Symbol | |
|---|
| ID | 8136833 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Geobacter sp. M21 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012918 |
|---|
| Strand | + |
|---|
| Start bp | 1758571 |
|---|
| End bp | 1759854 |
|---|
| Gene Length | 1284 bp |
|---|
| Protein Length | 427 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 644869116 |
|---|
| Product | 3-isopropylmalate dehydratase large subunit |
|---|
| Protein accession | YP_003021318 |
|---|
| Protein GI | 253700129 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0065] 3-isopropylmalate dehydratase large subunit |
|---|
| TIGRFAM ID | [TIGR00170] 3-isopropylmalate dehydratase, large subunit
[TIGR01343] homoaconitate hydratase family protein
[TIGR02086] 3-isopropylmalate dehydratase, large subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 75 |
|---|
| Fosmid unclonability p-value | 0.691126 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGGTATGA CTACGGCTCA AAAAATATTT GCGGCCCATC TTGTTGATGA GCCTTTTGCT
GGCACCAAGG TGCTCAGCAT CGACGTCGTG ATGTGCCACG AGATCACGAC CCCGATCGCC
ATCGCCGACC TGATGGCGCG CGGCAAGGAC CGGGTTTTCG ACCCGAGCAA GATCAAGGCG
GTCATCGACC ACGTAACGCC GAGCAAGGAC AGCAAGACCG CCACCCAGGC GAAGATGCTG
CGCGACTGGG CCAGGCGGCA CGACATCAAG GACTTCTTCG ACATCGGGGC CAACGGCGTC
TGCCACGCGC TCTTCCCGGA GAAGGGTTTC ATCCGTCCGG GGAACACGGT GATCATGGGC
GACTCCCATA CCTGTACCCA CGGCGCCTTC GGGGCCTTCG CCGCCGGCGT CGGCACCACC
GACCTGGAAG TGGGGATCCT CAAGGGGGTC TGCGCCTTCC GCGAGCCCAA GACCATCCGC
GTCAACCTGA ACGGCACCCT CCCCAAAGGG GTTTTCGCGA AGGACGCCAT CCTGCGCGTG
ATCGGGCACC TGGGTGTTAA CGGCGCCACC GATCGTGTCA TCGAGTTCGG CGGACCGGTC
GTGGCCCGGA TGACCATGGA ATCGAGGATG ACGCTTTGCA ACATGGCGAT CGAGGCGGGG
GGCACCTCCG GCATCTGCAT GCCGGACCAG GTCACCGTCG ATTACCTCTG GCCCTTCATC
TCCGGATCCT TCGGCTCGAA GGAAGAGGCG CTTGCCGCTT ACAGCGTCTG GTGCTCGGAC
GCCGACGCCG CCTACGAGCA GGTGATCGAT CTCGATCTTT CCGACCTCGC CCCGCTTTGC
ACCTTCGGCT ACAAGCCGGA CCAGGTGAAG AGTGTGACCG AGATGGCCGG CACCCAGGTG
GACCAGGTTT ATCTCGGATC CTGCACCAAC GGCCGGTTGG AAGACCTCAG GGTCGCGGCC
CAGATCCTCA AGGGGAAGAA GATCGCCTCC CACGTGCGCG CCATCCTTTC TCCGGCGACG
CCGCAGATCT ACAAGGACGC GGTCGCCGAA GGGCTGATCC AGATCTTCAT GGACGCAGGC
TTCTGCGTCA CCAACCCGAC CTGCGGCGCC TGCCTCGGCA TGAGCAACGG CGTCCTCGCC
GAAGGCGAGG TCTGCGCCTC CACCACCAAC CGCAACTTCA TGGGGCGGAT GGGCAAGGGG
GGAATGGTGC ACCTGCTGTC GCCGGCGACC GCGGCTGCCT CCGCCATCGA GGGTAAGATC
GCTGACCCGC GCAACTACCT GTAA
|
|---|
| Protein sequence | MGMTTAQKIF AAHLVDEPFA GTKVLSIDVV MCHEITTPIA IADLMARGKD RVFDPSKIKA
VIDHVTPSKD SKTATQAKML RDWARRHDIK DFFDIGANGV CHALFPEKGF IRPGNTVIMG
DSHTCTHGAF GAFAAGVGTT DLEVGILKGV CAFREPKTIR VNLNGTLPKG VFAKDAILRV
IGHLGVNGAT DRVIEFGGPV VARMTMESRM TLCNMAIEAG GTSGICMPDQ VTVDYLWPFI
SGSFGSKEEA LAAYSVWCSD ADAAYEQVID LDLSDLAPLC TFGYKPDQVK SVTEMAGTQV
DQVYLGSCTN GRLEDLRVAA QILKGKKIAS HVRAILSPAT PQIYKDAVAE GLIQIFMDAG
FCVTNPTCGA CLGMSNGVLA EGEVCASTTN RNFMGRMGKG GMVHLLSPAT AAASAIEGKI
ADPRNYL
|
|---|
| |