| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | GM21_0695 |
|---|
| Symbol | |
|---|
| ID | 8136010 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Geobacter sp. M21 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012918 |
|---|
| Strand | + |
|---|
| Start bp | 831796 |
|---|
| End bp | 835152 |
|---|
| Gene Length | 3357 bp |
|---|
| Protein Length | 1118 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 644868312 |
|---|
| Product | alpha amylase catalytic region |
|---|
| Protein accession | YP_003020527 |
|---|
| Protein GI | 253699338 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG0366] Glycosidases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 30 |
|---|
| Fosmid unclonability p-value | 0.00000000568993 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAAGAAGA GATTAATCAA CTCCGACTAT TTCCCCTTCC AGATTCAGAT CTCGGCGGAT
TGCGGCTCGA AGATTGAGTT GCGCGACCTG CTCGAGGAGC TGGGAGAGGT GCCTGGCATC
ATCTACGCCA GGCGGATAGC GGCCAAGCTG AACCGCCAGT TGGCCCCGCA GGAAACCCCG
GTCCAGCCCG GCCTTTTGCA CCTATATTCC ATCTTGAGCC AGGTTTACCG CTACGTGCTC
AGCCAGTACT GCTCCAAACA ACAGCCGAGC ATACTGGCGG CCTTGATGGC GCAGGCGGGC
TACCCGGAGT TCTCCGGCGA CGCCGGCCGT GCGTTGTACC GCTTCATGGA GCTTTTCCCC
TCACGGCAGA TGGTCCTCGG CAACGAAACC CCGGAAGGGC TGTTGGCGCA GGACGGCGAG
GATCTGGCGC GCCGGCAGGC CTTGACCGCG GAGCTGCTCC TCATGCTCTT AAACGGGGAA
AACCGCGCGC TGAACCAGTT CCGGCGCATC TTCGACGCTT CGGAACTGGC CTCCTCCTCC
CCCTACCTCG CGGTGGCCCT GGAGCTCGAC CGCCGCCTGG CGAAGGCCCC CCCGTTCGAG
CCGGTGGGTG TGTCGCTCAC GGAGCTTTTG CGCGCCCCGC TGAAGGCCTC CCCCGACTCC
CTTTCCGGCC AGATCGCCTA CATACGTGAC AACTGGGCCT CGTTTCTCCC GCAGGAGCTT
CTGGGCGAGC TCGTGACCGC GCTCGACATC GTCTCCCAGG AAGGGCGCGC CTTCTTCGGC
GGCCCGGGCG AACCCAAGGT GCTTAAATTC GGCAGGAACG CCCAGCGAGG CGGCGACGAA
TATCCCGAGT ATGAGCGCTT TTCCCGGGAC GCCGACTGGA TGGCCAACGT GGTGATGATC
GCTAAGATGG TCTACGTCTG GCTGGGGCAG TTGGCGAAGA CCTACCAGAC CGAGGTGCAC
ACCCTGGACC AGATCCCGGA CGCCGAGCTG GACCGGCTGG CGCGCTACGG CTTCTCGGCC
CTGTGGCTGA TCGGCATATG GGAGCGCTCC CCTGCCTCTC AGACCATCAA GCGCATCTCC
GGCAACCAGG AGGCGATCTC CTCGGCCTAT TCGCTCTACG ACTACGTGAT CGCGCACGAC
CTTGGGGGGG AGTGGGCCTT GGAGAACCTG AGGCGGCGCT GCGCCGCGCG GGGCATCAGG
CTTGCGAGCG ACATGGTCCC CAACCATACC GGCCTCTACT CCAAGTGGAC CGTGGAGCAC
CCCGACTGGT TCATCCAGCT CGATTACCCC CCCTATCCCG ACTACCAGTT CAACGGACCC
GACCTCTCCC CCGACGGCCG TGTGGGGCTC TTCATCGAGG ACGGCTACTG GGACAAGCGC
GACGCGGCGG TGGTGTTCAA GCACCTGGAC CGCGACAACG GCAGGGTGCG CTACATCTAT
CACGGCAACG ACGGCACGAG CACCCCCTGG AACGACACGG CGCAGCTGAA CTACCTGATC
CCGGAGGTGC GCGAGGCGGT GATAGGGACC ATCCTCCACG TGGCGCGCCA GTTCCCGATC
ATCCGTTTCG ACGCCGCCAT GACCCTTGCC AAGAAGCACT ACCAGCGCCT GTGGTTCCCG
CTCCCCGGGC ACGGCTCGGG CGTCCCATCC AGGGCCGAGC ACGGCATGGA CCGCGCGAGT
TTCGACGAGG TCTTCCCGGT CGAGTTCTGG CGCGAGGTGG TGGACCGGGT CGCGGTGGAG
GCGCCCGACA CGCTACTCCT GGCGGAGGCG TTCTGGCTCA TGGAGGGGTA CTTCGTGCGC
ACCCTCGGCA TGCACCGGGT CTACAACAGC GCCTTCATGA ACATGCTGAA GATGGAGGAG
AATGCCAAGT ACCGGCAGAC GGTGAAAAAC GTGCTGGAGT TCGAACCGGA GATCCTGAAG
CGGTTCGTCA ACTTCATGAA CAACCCCGAC GAACGCACCG CGGTCGAGCA GTTCGGCAAG
GAAGGGAAGT ACTTCGGCGC GACGGTGCTC CTGGTCACCA TGCCGGGGCT CCCCATGGTC
GGGCACGGAC AGATCGAGGG GTTCCACGAG AAGTACGGGA TGGAGTACAA GCGGGCCTAT
TGGGACGAGC CGGTGGACGA GCACCTGGTG GCCCGGCACG AGAGCGACAT CTTCCCGCTC
ATGCGCAGGC GCCACATCTT CTCGGGAAGC GAGCAGTTCA CCCTGTACGA CTTTTTCAGC
GGCAACAGCG TGAACGAGAA CGTCTTCGCC TACTCCAACC GCAACAACGG CGAACGCGGG
CTGATCCTTT TCCACAACGC CTTCGCCTCC ACCGCGGGGT GGATCAGGAG CTCGTGCGCG
GTGCTCAGGA AGAACGCCGC AGGGGGGACC TCGCTGGTTC AGACGAACCT TGGGGAGGCG
CTGGGCTTCA AGGGGGACGG GCGCCATTAC TACTCGTTCC GGGATTACGC CTCGGGGCTT
AGCTACTTGA GAAACGGCCG CGACCTCTGC GACCAGGGGC TCTACGTGGA GATGGAGGGG
TACGAGTACC ACGCCTTCCT CGACTTCGAG GAGATCTACG ACGACGATTT CGGGACCTGG
GGCGCCCTCT GTTACCGCAT GAATGGGGCG GGGGTGGAGA GCATCGAGGA GGAGGTGAAG
CAAGTTCGCT ACGCCTCGGC CCACGGCGCC CTGCAATCGC TGCTCTCCAA GGCGGCCGCC
GCGGCCCGCG AGCCGGGAGC CACCGTGCAG TCGCTCCTAT CCCAGCTGGA GCCGCTTCTG
GCTGCCTTCT TCAAGGCCGT CGCGCCGCAG GCCCCCGAAA AGGTGCAGCG CCTTTTGGTG
AGCGCCTTCG GAACCGAAGC GGACGACGCG CTGCGGGGGG CATCGACCGG TCCGGAGCGC
GCCCCCGGGG AATGGCTCCT TCTTTGCGCC TATCTGGCCC TGCACCGGAT CGGCGACCTC
TCAGGCGAGG AATCGGCGGA GGTGGTCGAT GCGCTCGGCC TTGTGCGCCC GGTGGTGCAT
GCCTTTCACG CACTTCCCCC CGCCGAGCCG GAAGAGGCGG CCGACCTCTC GCCGGACGCC
TACGGCAAGC TGTTGCGGGT ACTTTTGCGC CAAGATTCCT TCTTCTCGCT CTGCCGCGAG
CTCGGTGCGT TGAAAAGCTG TGCCGCGCTT TTCTCCGACC CGGCGGCTGC CGGTTTTGTC
TACCTGCATG AAAGCGCCGG GGTGCAGTGG TTCAACAAGG AGCGCTTCGA GCTCCTGCTC
GACTGGTTCC TGAAGCTAGA CGAGGACAGT GCGCTGCACG GGATGCTCAG GGAGAGCGCC
GCGGCGGCCG GCTACCGGCT CGATGAGCTA ATTAAAATCT TGGGGTCTCC TTCCTGA
|
|---|
| Protein sequence | MKKRLINSDY FPFQIQISAD CGSKIELRDL LEELGEVPGI IYARRIAAKL NRQLAPQETP
VQPGLLHLYS ILSQVYRYVL SQYCSKQQPS ILAALMAQAG YPEFSGDAGR ALYRFMELFP
SRQMVLGNET PEGLLAQDGE DLARRQALTA ELLLMLLNGE NRALNQFRRI FDASELASSS
PYLAVALELD RRLAKAPPFE PVGVSLTELL RAPLKASPDS LSGQIAYIRD NWASFLPQEL
LGELVTALDI VSQEGRAFFG GPGEPKVLKF GRNAQRGGDE YPEYERFSRD ADWMANVVMI
AKMVYVWLGQ LAKTYQTEVH TLDQIPDAEL DRLARYGFSA LWLIGIWERS PASQTIKRIS
GNQEAISSAY SLYDYVIAHD LGGEWALENL RRRCAARGIR LASDMVPNHT GLYSKWTVEH
PDWFIQLDYP PYPDYQFNGP DLSPDGRVGL FIEDGYWDKR DAAVVFKHLD RDNGRVRYIY
HGNDGTSTPW NDTAQLNYLI PEVREAVIGT ILHVARQFPI IRFDAAMTLA KKHYQRLWFP
LPGHGSGVPS RAEHGMDRAS FDEVFPVEFW REVVDRVAVE APDTLLLAEA FWLMEGYFVR
TLGMHRVYNS AFMNMLKMEE NAKYRQTVKN VLEFEPEILK RFVNFMNNPD ERTAVEQFGK
EGKYFGATVL LVTMPGLPMV GHGQIEGFHE KYGMEYKRAY WDEPVDEHLV ARHESDIFPL
MRRRHIFSGS EQFTLYDFFS GNSVNENVFA YSNRNNGERG LILFHNAFAS TAGWIRSSCA
VLRKNAAGGT SLVQTNLGEA LGFKGDGRHY YSFRDYASGL SYLRNGRDLC DQGLYVEMEG
YEYHAFLDFE EIYDDDFGTW GALCYRMNGA GVESIEEEVK QVRYASAHGA LQSLLSKAAA
AAREPGATVQ SLLSQLEPLL AAFFKAVAPQ APEKVQRLLV SAFGTEADDA LRGASTGPER
APGEWLLLCA YLALHRIGDL SGEESAEVVD ALGLVRPVVH AFHALPPAEP EEAADLSPDA
YGKLLRVLLR QDSFFSLCRE LGALKSCAAL FSDPAAAGFV YLHESAGVQW FNKERFELLL
DWFLKLDEDS ALHGMLRESA AAAGYRLDEL IKILGSPS
|
|---|
| |