| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Franean1_7224 |
|---|
| Symbol | |
|---|
| ID | 5675525 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. EAN1pec |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009921 |
|---|
| Strand | + |
|---|
| Start bp | 8820081 |
|---|
| End bp | 8821865 |
|---|
| Gene Length | 1785 bp |
|---|
| Protein Length | 594 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 641246061 |
|---|
| Product | integral membrane sensor signal transduction histidine kinase |
|---|
| Protein accession | YP_001511449 |
|---|
| Protein GI | 158318941 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG4585] Signal transduction histidine kinase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGCCACATC CGTTCCTGCC GCGGCCCCTG ACCCGAATGG CCGCCAGGCA CCGTTCCGCC
GCCCTGACCA TCACGGGCAT CACGACGGTC GCGATCACCG TCGCGGCCCA GTGGCCGGCG
TGGTCCACGA CGCCGTTCGC CGCCGCGCTG AACGTCTTCG TCTCCCTCAC CTTCGTCCTC
ACCGGGCTCC TGCTCCTGGA CGAGGACGCC CTCGACAGCG TGAGCAGCGC GTTCGTCCTC
GGCGGGGTGC TGTGGACGGC GTCCTGGGCG GCGACCTGGG AGGCCGGCCC GTCCGCTGTG
CTCTCCTCGT TCGCCTACAC CCACTTCTGG GTCTGCCTCG GGTGGGGCGT GCTTCGATAC
CCGTCAGGAC GTCTGCACGA CAACAGCGAA CGAGTGCTGC TCGGCACCGC CGTCGCGGTG
ATCCCGGTGG GCAACCTCGT GCTGATCGCA CTGTCCCGCC CGGAGTCCTT CGGCTACGCC
CCCGGCGTGT GGTGGTACGG CTCCGCGATC GACCCGGGCG TGTTCGACAT CGTCGTGCAC
ACCCTCGACG CACTGACCCT CGCGGTCGTC GTCGCCTTCG GCCTGGCCAT CGCCCGGCGC
TACCGGCGGG CCTCCGCGCT GGAGCGGCGC ACCCTCGGGC CGGTCTCCCT CGGCGTGCTC
GCCGCGTTCG CCATAGCCGC GGTGGTGAAC CTGTTCGTCT ACTACCCGCA GGGCGCCGAG
ATCGATCCGA TCTTCATCCC GATAGCACTG GCACTGTTCG CGATCCCGGT GGCATTCGCC
GTGGCCGCCG TGCGCCGCCA TCTCGCCCGG GCCCGCATCG CCCAGCTGCT GAGCGGGCTG
AGCACGCCGC CGACGCCGGC GGCCGTCCGC GAGGTGCTGC GGGCGGCGGT CGGCGACGAC
GGCGCGGAGC TCTACCTGTG GATGCCCGAA CGCGGCTTCC ACGTGGACGC CGACGGCCTG
CCGGCCGTCC CGCCCACGGC GGGAGGCACC CAGCTCGCGC TGCCGGTCCG CACCACGGCC
GGCGCGCCGC TGGCCGTGCT CTCCGCGCGC TCGTCGCTGG AACGCGACCG CGACCTGGTC
GAGGTCGCGC TGAACGCCAG CGCCATCGCG CTGGAGAACG CGCGGCTGCA CGCCACGGTG
ACCGCCCAGC TCGACGCCGT CCGCGCGACC CGGACCCGAC TCGTCGAGGC CGGGCTCGCC
GAACGCCGGC GGATCGAGCG CGACCTGCAC GACGGCGCGC AGCAGCGGCT GCTGGCGCTC
TCGGCCCGGC TCGGACTCGC CCGGGAGCAG TCCACCGACC AGGCCACCGT CGCCGCCCTC
GAGGGAGCCC GGGAGGACCT GCGCGCGGCG CTCGCCGAGC TGCGCGGACT CGCCCGCGGC
ATCCATCCGC CCGTGCTGAG CGAGAGCGGG CTGAAAGCGG CACTCGAGAA TGTCACCGAG
GCCCTCCCCG TGGATGTCGA CCTTGATGTG CCTGACGATC GATTCGATAC CACGCTGGAG
ACCACGGCGT ACTACACCGT GAGCGAGGCT CTGGCGAATA CCGTCAAACA CGCGGATGCC
AGCCATGTGC GGGTAACGGT CAAAATGCTC GGCGGCCAGT TCCTCATCCA GGTGACCGAC
GACGGGAAGG GCGGTGCGAC CATCAGCGGC GGCGGCGGAA TCGCCGGCCT CGGCGACCGG
GTCCGCGCAC TCGGCGGCGA GTTCACGCTG TCGAGCCCGG AGCGCTGCGG CACCCGGTTG
ACGGCGAGCA TCCCGTGGAG CAGCGACGCG CGAGGTGGGT GGTGA
|
|---|
| Protein sequence | MPHPFLPRPL TRMAARHRSA ALTITGITTV AITVAAQWPA WSTTPFAAAL NVFVSLTFVL
TGLLLLDEDA LDSVSSAFVL GGVLWTASWA ATWEAGPSAV LSSFAYTHFW VCLGWGVLRY
PSGRLHDNSE RVLLGTAVAV IPVGNLVLIA LSRPESFGYA PGVWWYGSAI DPGVFDIVVH
TLDALTLAVV VAFGLAIARR YRRASALERR TLGPVSLGVL AAFAIAAVVN LFVYYPQGAE
IDPIFIPIAL ALFAIPVAFA VAAVRRHLAR ARIAQLLSGL STPPTPAAVR EVLRAAVGDD
GAELYLWMPE RGFHVDADGL PAVPPTAGGT QLALPVRTTA GAPLAVLSAR SSLERDRDLV
EVALNASAIA LENARLHATV TAQLDAVRAT RTRLVEAGLA ERRRIERDLH DGAQQRLLAL
SARLGLAREQ STDQATVAAL EGAREDLRAA LAELRGLARG IHPPVLSESG LKAALENVTE
ALPVDVDLDV PDDRFDTTLE TTAYYTVSEA LANTVKHADA SHVRVTVKML GGQFLIQVTD
DGKGGATISG GGGIAGLGDR VRALGGEFTL SSPERCGTRL TASIPWSSDA RGGW
|
|---|
| |