Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Franean1_7031 |
Symbol | |
ID | 5675342 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Frankia sp. EAN1pec |
Kingdom | Bacteria |
Replicon accession | NC_009921 |
Strand | - |
Start bp | 8575299 |
End bp | 8579282 |
Gene Length | 3984 bp |
Protein Length | 1327 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 641245877 |
Product | diguanylate cyclase with PAS/PAC sensor |
Protein accession | YP_001511268 |
Protein GI | 158318760 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG2199] FOG: GGDEF domain |
TIGRFAM ID | [TIGR00229] PAS domain S-box [TIGR00254] diguanylate cyclase (GGDEF) domain |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 1 |
Plasmid unclonability p-value | 0.153977 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 17 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGACCATGG CCACTCGGAT CTTTCCGGTC CGGCGCGGAT CTGAAGATCG CAGGCCAAAG GATCGTAGAT TTGGCGATCC TCCTATATCG GGCGCGCTCG GCGCATCCGA CCTGCGTGAT CTCACCCGGC GCGGCCGGCT TCGGCGAGCC ATGCCGCTGC TGGTCGGCCT GGCAGCCTTT CTTCTTCTCG TCGCGGTCAT CTTCGCCATC AGCAGTGAAA GCCTGGCGAC CTCCGAGCGG GAGCGGCTGA GTAACCGGGC ACATCTGACC GAACAGATGG CGGCCTACAC GTCGCGTGCC GTCGACCCTC AGCTTCAGCA GTCCCGCGTC GACGCGGCCG GATTCTCCCT GACGGATCAA GCGCGCAACG CGCACTTGTT GACATCGTTT CGGATCAATC CTGCAAGTGA CCCTAACTTC GTCGTCGCTC TGTTGGACCG CGACGGGCAT CCGCTGGTGT CCCGACCGGT GAGTGCCACG ATTCCAGTGA GCGCCCTCGG TGACGCCTGG CCGACTGCGC TTGCCGGGCA GGCCGCGAGG TCGCCGGTGT TCGTCATCGA TGGTCTTGTC GGCCGGGCGA CAGTGGTGCC GGTCGGCGAA GGACGTCCGT GGGCCGCCCT TGTTACCGTC GCTACGGACG ATCTGGCTCA ACGCTTCGAC GAGCAGCTCG GTTCGCTCGA GCTCGGTCCC GGGGGCCTCA CCACTGTTGA CTCGGCCGGG GTCGCGGCAT CCTCCTGGGA TCCGGCGCTG GTCGGCCGGC GCGTCATCGA CCCGGAAATG CTGCGCGGGA TTCCGCCGCT GCCGGCGCGG GTGTGGACGT CCGGGCATGG CTCCGACGAG GTGACGAACA TCGCCGCCCA GCAGGCGAGC AGCGGATACA TCAACCTGTT TCAGCAGCGA ACCGACGCGT TCTACTCCGA CCTGCGTGCA CAGCAGTGGT CCCGGAACCT GACCGTGATC GCCGTGGGAG CGGTGGCGAT GCTGGGGCTG GTCGTCTTCG GCCTGCGCCG GGAGGTGAGC GCCCGCCGTG CTGGTAAGCG GCTCGACGAG CTGTTGCGCA ACACCCGGGA CCTGATCGCC GTCGTCCGTC TGGACGGTGT GGTGAGCTTC CTGAGCCCGT CGATCGAAAG GCTGCTCGGC AGCCGTGCCT CGGACTGGCT CGGTCGACCG CTGGCACAGC TCGTCCATCC GGCCGACCGG GAGCGCCTCG ACCGATTGCT GACCGATGGC GGCGCGGTCC TCGACGTCCG ACTGTGTGGC GCCGACGGCG CCATCCACTG GTTCGACCTG GAGGCCGCCG ACCTTCCTCC GCGGGCCGGC CTGGCCGGTG TGCTGGTCAC CTGCCATGAG ATCGGGGAAC GCAAGAAGCT GCAGGACCGG CTTGGTCATC AGGCACGCCA CGACTTGCTG ACCGGTCTGG CCAACCGGTC CGGGTTCGGT GATCGGCTTG CCAGCGCGCT CGCCGTGAGC AGCGAGTCGA GCTGCGCCGT CCTTTATCTG GACCTTGACG GGTTCAAGCC CATCAACGAC TCGCTCGGAC ACGCGGCCGG AGACCGGGTG CTGGCGATCA TCGGCGCGCG GTTGGCGGCG CTGTTGCGTG AAGGCGACCT TGCCAGCCGG CTCGGCGGTG ACGAGTTCGC GATGCTGCTT CGCGACAGCG ACCTCGCGAC TGCGAGTCTG GTGGCGGATC GGGTGATCAG AGCCGTCGCC GAAAAGATCA TTCTTGAGGG CGAGTGCGTG CAGGTAGGCG CGAGCGTGGG CATCGCGATG GGCAGACCAG GCCGCAGCCG TGCTGACGAA CTGATCCACG CCGCGGACAC GGCGATGTAC GCCGCCAAGC GCGATGGCGG GAGTCGGGCC GCCATCGCGC TGCCCACCCC GTCCACAGCC GCCGACGCGG ACGATATTCT TGGCCCGCGC GACCTTGGCA GGCCCTCGGC CACCATTGCC GCCGTCGACG TAACAAACGT CGCGGACGAT CACCCGGGTG CGCCGCAGCT GGCAAACCCA GCAAGCGCGA CCTCGGCAAG CCCGGCGAAA CTGGTGGAAC CGGCGGGATC GGCGGACCTG GAGCCGGGAA GACCGCTCGG TTCGGCGGTA CGAAAACCAC CGTCCGCGCG CCCATGGTGG TGGTCCCGTC GCTCCGAGGC CGTCCGCTCC ACACACCGTG GCGAGGCCGC AGCCCCTCAA CGGCGCGCCC CCCAGATATG TTTCGGCCGT ATCGTGCCGC TGTTGGTCGC CGCGCTGACC TTGCTCGGTA TCGCGTCGTT TGGTCTGTGG CAGGAGTCCC AGGCGCTACG GGCAGCGGAA GCAAGCGCGA TGCGCGAACG CCTCGCGCAG ACCGCACGCA TGGCCGACTA CATGTCGGCC ATGCAGGACC CGCAGCCATT GGTCTCGGCC GCGTCCGCCG AGTCATGGTC GCCGACGGAT CTGACACACA ACCAGACCAT CCTGCAACGG TTCGCCCAGT CGCCCGAGGG CGGACCGGAC ACCCTGGCCT CGCTGGTCGG CCTCGACGGA CGAACGATCG CGGCCGAGCC GGCCGCTGCC CCGCCGATGC CGATCGCTAC GGACAGCCCG CAGTGGCAGG CGGTGCTGGC CGGGCGGGCG ACCACCTCCC AGGTGGTCAT GGTGGATGGA GTCGCGCGGC TGTACACCCT GGCGCCGGTA CTCGAGGACG GGCGCCCGGT CGCCGTCCTC ACCCTCGGCC GCTCGGCGCG AGACGCCCTG CCCAGCTTCT TCCTCGCCGC GCTCGGCGGT ATGGGGCTGC GCGACGGCGG CGGCGCCGTC GTCGACCGCT CCGGCCGGGC ATCCTTCTCC TGGAACCCCG GCCTGGCCGG CCGGCCGCTG GTGAACCCGG CCGACCTGGC GGACCTGCGG ATGGGGAAGG CCGAGCGGGT AACCCTCGTC GATGACTCGA ACGAGATTAT GCTCGCCGCG CCGATCTGGT CCCTTGACGG TGCGTACTTC GTCTTCCAGC AACCCGCCAC GGCCCTGTTC GCCGGGCTTC GGGAGGGCCA GGGCCTGCTT GCGGTAAGCC TGTTCGGCAC CATCGGCATC GCTATCCTCG GCATCGCCGT CTCGAATGCC CGCCGGGAGA ACGCGCTGCG CCGCGAGGAA TCCCAGCTGC ACGCGCTGCT ACACAATGCC CACGACATCG TCATCGTTGC CGATCGTGAC TGTCGGATAA CTTTTGCCAG CTCCGACGCG ACGGGTCTAC TCGGCCAGCC CACGGCGGGC TGGATCGGAA AAATCTTCCC TGACCTCAGC CATCCCGAGG ACGCCAGCCG CCTCCGGCAG TTCCTCGGTG CCCGCGACCG CGAAGGGCAG GGCGCGATCC GCGAGATCCG GCTACGCGCC TGCGATGGCT ATCGGTGGTT CGATATCCAC GCCTCGGAGC CGCACCACAC ACCGGTCCTG TCCGGCATCG TCCTGACTTG TCATGAGATC GGGGGACGCC GACAGATGCA GGCCGAACTC GCCTATCGGG CCAGCCACGA CCCTCTCACA GGCCTGCCCA ATCGGGCCGC GTTCGACCGC CATCTGGCGG CTGTGGCCGA ACACGAGCAG GCCGGAACGA GCTTCGCCGT GCTTTTCATC GACCTGGACA ACTTCAAGCC CGTCAACGAC AGGTTCGGCC ACGCTGTCGG CGACGACGTC CTGCGCGTCA TTGGCGCCCG CATCGGGGCC GCATCCCGGA AGACGGACAT GGTCAGCCGC CTCGGCGGAG ATGAGTTCGC GGTCCTCGTC GACGAGGCCG ACGACGATCT CGTCTGCGCC ATCTCCGCGC GCATCCTCGA AACCAGCAGG CAGCCCATCG CGCTGGCCGG GACCACCATC GCCCTCGGCG CCACTATCGG GATCGCGCTG TGCCGCGCCG GCATCGACGA CCCCGAAACC GCCCTGCGCA ATGCCGATAA TGCTATGTAT CGGGCCAAAC GGGCGGGTCG TGACCGCTAC GCCCTCTTCA CCGACCGGCC CTGA
|
Protein sequence | MTMATRIFPV RRGSEDRRPK DRRFGDPPIS GALGASDLRD LTRRGRLRRA MPLLVGLAAF LLLVAVIFAI SSESLATSER ERLSNRAHLT EQMAAYTSRA VDPQLQQSRV DAAGFSLTDQ ARNAHLLTSF RINPASDPNF VVALLDRDGH PLVSRPVSAT IPVSALGDAW PTALAGQAAR SPVFVIDGLV GRATVVPVGE GRPWAALVTV ATDDLAQRFD EQLGSLELGP GGLTTVDSAG VAASSWDPAL VGRRVIDPEM LRGIPPLPAR VWTSGHGSDE VTNIAAQQAS SGYINLFQQR TDAFYSDLRA QQWSRNLTVI AVGAVAMLGL VVFGLRREVS ARRAGKRLDE LLRNTRDLIA VVRLDGVVSF LSPSIERLLG SRASDWLGRP LAQLVHPADR ERLDRLLTDG GAVLDVRLCG ADGAIHWFDL EAADLPPRAG LAGVLVTCHE IGERKKLQDR LGHQARHDLL TGLANRSGFG DRLASALAVS SESSCAVLYL DLDGFKPIND SLGHAAGDRV LAIIGARLAA LLREGDLASR LGGDEFAMLL RDSDLATASL VADRVIRAVA EKIILEGECV QVGASVGIAM GRPGRSRADE LIHAADTAMY AAKRDGGSRA AIALPTPSTA ADADDILGPR DLGRPSATIA AVDVTNVADD HPGAPQLANP ASATSASPAK LVEPAGSADL EPGRPLGSAV RKPPSARPWW WSRRSEAVRS THRGEAAAPQ RRAPQICFGR IVPLLVAALT LLGIASFGLW QESQALRAAE ASAMRERLAQ TARMADYMSA MQDPQPLVSA ASAESWSPTD LTHNQTILQR FAQSPEGGPD TLASLVGLDG RTIAAEPAAA PPMPIATDSP QWQAVLAGRA TTSQVVMVDG VARLYTLAPV LEDGRPVAVL TLGRSARDAL PSFFLAALGG MGLRDGGGAV VDRSGRASFS WNPGLAGRPL VNPADLADLR MGKAERVTLV DDSNEIMLAA PIWSLDGAYF VFQQPATALF AGLREGQGLL AVSLFGTIGI AILGIAVSNA RRENALRREE SQLHALLHNA HDIVIVADRD CRITFASSDA TGLLGQPTAG WIGKIFPDLS HPEDASRLRQ FLGARDREGQ GAIREIRLRA CDGYRWFDIH ASEPHHTPVL SGIVLTCHEI GGRRQMQAEL AYRASHDPLT GLPNRAAFDR HLAAVAEHEQ AGTSFAVLFI DLDNFKPVND RFGHAVGDDV LRVIGARIGA ASRKTDMVSR LGGDEFAVLV DEADDDLVCA ISARILETSR QPIALAGTTI ALGATIGIAL CRAGIDDPET ALRNADNAMY RAKRAGRDRY ALFTDRP
|
| |