Gene Franean1_6993 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagFranean1_6993 
Symbol 
ID5675304 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameFrankia sp. EAN1pec 
KingdomBacteria 
Replicon accessionNC_009921 
Strand
Start bp8515355 
End bp8518834 
Gene Length3480 bp 
Protein Length1159 aa 
Translation table11 
GC content69% 
IMG OID641245839 
ProductGAF sensor hybrid histidine kinase 
Protein accessionYP_001511230 
Protein GI158318722 
COG category[K] Transcription
[T] Signal transduction mechanisms 
COG ID[COG0642] Signal transduction histidine kinase
[COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.922616 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones17 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGAGCCCTA ATCCGTCTAC TCTACTGCGG GACATCCGCG AGGATCGGGA CATCTCTCAT 
GCCGCTTCTC GCGCCGCTTG GCACAGCGGC CGCACGACCG GGCTGGAGGA CGAGACGGTG
ACTGAGGTAA CGGCGCGTAA CCAGACCCCG GCCCAGCTGG ACGACCCGGC GCTGCGTCAG
TTGCTCGCCG GTCTCACCGC CGTGCGGGGT GGGGATTTCG GAACCCGGCT GCCGCGCGTC
GGCGACGAGC TGATGGACGA GATCGCCACC GTCTTCAACG GGATGATCGA CCAGCTCGCG
CTGTTCACCT CCGAGGTGAC GCGGGTGGCC CGGGAGGTCG GCACCGAGGG CAAGCTCGGC
GGCCAGGCCG AGGTGCCGGG CGTCTCCGGC TCCTGGAAGG ACCTGACCGA CAACGTCAAC
GCGATGGCGG GGAACCTGAC CGGCCAGGTC CGTGACATCG CGCAGGTCGC GACGGCGGTC
GCGGAGGGCG ACCTCTCCCA GAAGATCCGC GTCGACGCCC GGGGCGAGAT TTTGGAGCTG
AAGGAGACCA TCAACACGAT GGTCGATCAG CTTTCGGGTT TCGCGGACGA GGTGACGCGG
GTGGCTCGGG AGGTCGGCAC CGACGGTCGT CTCGGTGGTC AGGCGGACGT CAAAGGTGTG
TCGGGTACCT GGCGCGACCT CACCGAATCC GTCAACGTCA TGGCCGGCAA CCTGACCAGC
CAGGTGCGTT CCATCGCGCA GGTCGCGACG GCGGTCGCGC GGGGCGACCT CTCCCAGAAG
ATCCGCGTCG ACGCCCGGGG CGAGATTTTG GAGCTGAAGG AGACCATCAA CACGATGGTC
GATCAGCTTT CGGGTTTCGC GGACGAGGTG ACGCGGGTGG CTCGGGAGGT CGGCACCGAC
GGCCGCCTCG GTGGCCAGGC GAGCGTCAAG GGCGTCTCCG GCACCTGGAA GGACCTGACC
GACAACGTCA ACTTCATGGC GAACAACCTC ACCAGCCAGG TCCGCAACAT CGCCCAGGTC
ACCACGGCCG TCGCCCGCGG TGACCTGACC AGGAAGATCG ACGTCGACGC CCGCGGCGAG
ATCCTCGAAC TGAAAACGAC CATCAACACG ATGGTGGACC AGCTGTCCTC GTTCGCGGCC
GAGGTGACCC GGGTGGCGCG CGAGGTCGGC ACGGACGGCA TCCTCGGCGG CCAGGCGGAG
GTCGAGGGAC TCTCCGGCAC CTGGAAGCGC CTGACCGAGA ACGTCAACGA GCTCGCCGGG
AACCTCACCC GCCAGGTCCG GGCCATCGCC GCCGTCACCA GCGCGGTCGC CACCGGCGAC
CTGACCAGGT CGATCACGGT CGACGCGCAG GGCGAGGTCG CCGAGCTCAA GGACAACATC
AACGCGATGG TCCGCTCCCT GCGCGAGACC ACCCGCGCCA ACCACGAACA GGACTGGCTG
AAGACCAGCC TCGCCCACAT CGCCGGGCTC ATGCAGGGCC ACCGCGAGCT GGAGACCGTC
GCGCAGCTGG TCATCGACGA GCTGACCCCG ATGCTCGACG CGCAGCACGG CACCTTCTTC
CTCGCCGACG CCGGTGTGGA CGCCCCGGCG CTCACCCTCA TCGCGAGCTA CGGGTACCGG
CCCACCCCCG ACATGCCGCG CAGGTTCGAG TTCGGCCAGT CGCTCGTCGG GCAGGCGGCG
CGGACGAAAC GGTCCATCGT GGCCCGCACC CCCGCCGACT ACCTGAAGAT CGCCTCCAGC
CTCGGCGAGG CGACCCCGGT GACGCTGATC GTGCTGCCGA TCCTGTTCGA GGACCAGGTG
CTCGGCGTCG TCGAGCTCGC CTCCTTCACC CCGTTCACCC AGGTCCACCT CGACCTGCTG
AACCAGCTGA CGGAGACGAT CGGCGTCAAC GTCAACACGA TCATCGCGAA CTCGCGGACG
GACGCGCTGC TCGAGGAGTC CCAGCGGCTC GCGGGCGAGC TGCAGGCCCG GTCCGAGGAG
CTGCAGTCCC GCCAGGAAGA CCTCCAGCTC TCCAACGCGG AGCTGGAGGA GAAGGCCACC
CTGCTGGCCA GGCAGAACCA CGACATCGAG GTCAAGAACG CCGAGATCGA ACAGGCCCGC
CAGGAGCTGG AGGAACGCGC CCGGCAGCTG GCGCTCGCCT CCAAGTACAA GTCCGAGTTC
CTGGCGAACA TGTCGCACGA GCTGCGCACA CCACTGAACA GCCTGCTGAT TCTCGCCCGC
CTGCTGGCGC AGAACCCGAC CCGCAACCTC ACCGCCAAGC AGGTGGAGTA CGCCCACGTC
ATCCACACCG CCGGCTCGGA TCTACTTCAG CTGATCAACG ACATTCTCGA CCTCTCCAAG
GTCGAGGCCG GGAAGATGGA CATCCACCTG GAACGGGTCG TTCTGCGTGA TCTCGCCGAG
GACCTGAAGA GCACCTTCTC GCCGATCACC GTGGAGAAGG GCCTGCGGTT CACCGTGGAC
CTCGCCCCCG GCATACCGGC CGATCTCCTC ACCGATCAGC ACCGCCTCGC GCAGGTGCTG
CGCAACCTGC TCTCCAACGC GGTGAAGTTC ACCGAGCGCG GCAGCGTCGA ACTCGCCATC
GTCGCCACCC TGGGCGGGGA CCTGTCACCG GCCACCCCCA GCGTCACCTT CAAGGTCACC
GATACCGGCG TCGGTATCGC CGAGGAGAAC CTCGAACGCA TCTTCGGGGC GTTCCAGCAG
GGCGACGGCA CCACCAGCCG CCGCTACGGC GGCACCGGCC TCGGCCTGTC CATCTGCCGT
GAGGTCGCCG CCCTCCTCGG CGGCGAGATC GAGGCCCGCA GCGAGTTCGG CAGGGGCAGC
ACCTTCAGCC TGCGGCTGCC GCTGGCTCCC CCGCCGCCGA CTGAGCCCGA GATGGTTCCT
CGGCCCCGCC GCACGCAGGC CCTGAGCGAG ACCGAGCCTT CGTCAGGCGA CCCGCGCCCC
GTCGGCGCGC CGTCCGCCCT CGCCGCCCCT GCGCCGCCCG CCGTCGTGCC CGGCCCGCCG
AGCGCCCTGC CCGTGGACGA CCGGCGTCCG CCGCGGCAGG CGGCCTACAA CAACGACCAG
CTGACCGGGT GCACGGTGCT GGTGGTGGAC GACGACGTGC GCAACGTCTT CGCCATCACC
AGCATCCTCG AGCTCTACGG GCTGAACGTG ATCCACGCCG AGAACGGTCG CCGGGGCATC
GAGATGCTGC AGTCCGATCC GAGCATCGAC CTGGTCCTGA TGGACGTCAT GATGCCCGAG
ATGGACGGCT ACACGACCAT GACCGCGATC CGCACCATGC CGCGGATCGC GGATCTGCCG
ATCATCGCCG TCACCGCGAA GGCCATGCCC GACGACCGGC AGAAGTGCCT CGACGCCGGC
GCGACCGACT ACATCACCAA GCCCGTCGAC GTCGACGAGC TCCTCGCCTG CATCCGAACG
AGGCTGGTCA CCGGTTCGGG CGTCGGCGGG CGGCGGGCAG GAGGGCTGGG CGCTGGGTGA
 
Protein sequence
MSPNPSTLLR DIREDRDISH AASRAAWHSG RTTGLEDETV TEVTARNQTP AQLDDPALRQ 
LLAGLTAVRG GDFGTRLPRV GDELMDEIAT VFNGMIDQLA LFTSEVTRVA REVGTEGKLG
GQAEVPGVSG SWKDLTDNVN AMAGNLTGQV RDIAQVATAV AEGDLSQKIR VDARGEILEL
KETINTMVDQ LSGFADEVTR VAREVGTDGR LGGQADVKGV SGTWRDLTES VNVMAGNLTS
QVRSIAQVAT AVARGDLSQK IRVDARGEIL ELKETINTMV DQLSGFADEV TRVAREVGTD
GRLGGQASVK GVSGTWKDLT DNVNFMANNL TSQVRNIAQV TTAVARGDLT RKIDVDARGE
ILELKTTINT MVDQLSSFAA EVTRVAREVG TDGILGGQAE VEGLSGTWKR LTENVNELAG
NLTRQVRAIA AVTSAVATGD LTRSITVDAQ GEVAELKDNI NAMVRSLRET TRANHEQDWL
KTSLAHIAGL MQGHRELETV AQLVIDELTP MLDAQHGTFF LADAGVDAPA LTLIASYGYR
PTPDMPRRFE FGQSLVGQAA RTKRSIVART PADYLKIASS LGEATPVTLI VLPILFEDQV
LGVVELASFT PFTQVHLDLL NQLTETIGVN VNTIIANSRT DALLEESQRL AGELQARSEE
LQSRQEDLQL SNAELEEKAT LLARQNHDIE VKNAEIEQAR QELEERARQL ALASKYKSEF
LANMSHELRT PLNSLLILAR LLAQNPTRNL TAKQVEYAHV IHTAGSDLLQ LINDILDLSK
VEAGKMDIHL ERVVLRDLAE DLKSTFSPIT VEKGLRFTVD LAPGIPADLL TDQHRLAQVL
RNLLSNAVKF TERGSVELAI VATLGGDLSP ATPSVTFKVT DTGVGIAEEN LERIFGAFQQ
GDGTTSRRYG GTGLGLSICR EVAALLGGEI EARSEFGRGS TFSLRLPLAP PPPTEPEMVP
RPRRTQALSE TEPSSGDPRP VGAPSALAAP APPAVVPGPP SALPVDDRRP PRQAAYNNDQ
LTGCTVLVVD DDVRNVFAIT SILELYGLNV IHAENGRRGI EMLQSDPSID LVLMDVMMPE
MDGYTTMTAI RTMPRIADLP IIAVTAKAMP DDRQKCLDAG ATDYITKPVD VDELLACIRT
RLVTGSGVGG RRAGGLGAG