| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Franean1_6985 |
|---|
| Symbol | |
|---|
| ID | 5675297 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. EAN1pec |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009921 |
|---|
| Strand | + |
|---|
| Start bp | 8507177 |
|---|
| End bp | 8507866 |
|---|
| Gene Length | 690 bp |
|---|
| Protein Length | 229 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 75% |
|---|
| IMG OID | 641245833 |
|---|
| Product | two component transcriptional regulator |
|---|
| Protein accession | YP_001511224 |
|---|
| Protein GI | 158318716 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.0162975 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGGCGACGA TCCTGGTTGT CGAGGACGAC CCGTACGTGC GTGCCGCGCT GGTGCGGCAC
CTGTCCAGCG CCGGGCACGC GGTGCGCAGT GTCGGCGCGG CGCTCGACGC GCTGCGCGAG
GTGACGCAGG TCGGCTGCGA CCTCGTCGTG CTCGACCTGG GCCTGCCCGA TCTGGACGGC
GCGGCCGCAC TGCGGATGCT GCGCGGCGTC AGCGACGTCC CGGTGGTGGT CGCGACGGCG
CGCGGGGACG AGCCGGCGAT GGTCCGGCTG CTGCACAGCG GTGCCGACGA CTACCTGGTG
AAACCGTTCT CGCCGGAGCA TCTCGACGCG CGCGTCACCG CCGTGCTGCG CCGTACGAGT
CCGGCCGCCG CCACCGGCCG GGTACCGGCG TTCCGGGTGG GTGAGCTGGT GGTCGACCCC
CGGCAGCGCA CGGCGGTGCT GGACGGGCGG GATCTCGACC TCACCCGGCG CGAGTTCGAC
CTGCTGGCCT ACCTGGCCGC CCGCCCCGGC GACGTGGTGC CGCGCCGGGA GCTGCTGGCC
GCCGTGTGGC AGCAGGCGTA CGGCGGCGAC CAGACGATCG ACGTCCATCT GTCGTGGCTG
CGCCGCAAGC TCGGGGAGAC CGCCGCCCGG CCGAAGTACC TCCACACGGT GCGTGGCGTC
GGGGTCAAGC TCGAGGCGCC TCGGCCGTGA
|
|---|
| Protein sequence | MATILVVEDD PYVRAALVRH LSSAGHAVRS VGAALDALRE VTQVGCDLVV LDLGLPDLDG
AAALRMLRGV SDVPVVVATA RGDEPAMVRL LHSGADDYLV KPFSPEHLDA RVTAVLRRTS
PAAATGRVPA FRVGELVVDP RQRTAVLDGR DLDLTRREFD LLAYLAARPG DVVPRRELLA
AVWQQAYGGD QTIDVHLSWL RRKLGETAAR PKYLHTVRGV GVKLEAPRP
|
|---|
| |