| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Franean1_6917 |
|---|
| Symbol | |
|---|
| ID | 5675230 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. EAN1pec |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009921 |
|---|
| Strand | + |
|---|
| Start bp | 8425638 |
|---|
| End bp | 8426393 |
|---|
| Gene Length | 756 bp |
|---|
| Protein Length | 251 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 641245766 |
|---|
| Product | short-chain dehydrogenase/reductase SDR |
|---|
| Protein accession | YP_001511157 |
|---|
| Protein GI | 158318649 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
|---|
| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 0.780011 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGACCGAAC GGAAGACGGC CGTAGTCACC GGCGGCGGGT CGGGCATCGG GCGGGCGATC
AGCCTGCGAC TGGCCAAGGA CGGCTTCGCC ACCGCCGTGC TCGACATCAA CACCGAAAGC
GCCGAGCAGG TAGCCAAGGA AGCCCGCGAG CTAGGGTACG AGGCCGCCGC GTTCGGCGGT
GTCGACGTCT CCGACCGTGC GCAGGTGGAC GCGGCGATCG ACCGCATCCG CGCCACGTTC
GGCCCCGTCC TCGTGCTCGT GAACAACGCC GGTCTCACCG GCACCCTGGG TTTCCAGAAG
ATCACGGACG AGCTCTGGGA CCGGATGATC GCCGTCAATC TCAGCGGCCC GTTCTACCTG
ACCCAGGCCG TCCTCCCGGA CATGATCGAC GCTCACTGGG GCCGGATCGT CAACATCTCG
TCGTCGAGCG CGCACTCCGG CCAGCAGTAC ATGGTCCACT ACGTGTCGAC GAAGGCCGGC
CTCATCGGCT TCACCAAGTC GCTGGCCCTG GAGTACGGCC CCAAGGGCAT CACGGTCAAC
ACGATCCCGC CGGGATTCGT CGACACCCCG ATGCTGCGCG ACGTCGAGGC GAAGGGCTTC
ATCGGCGGCT CGATCGCCGA CCACGCCGAG CGCACCCCGG TGCGGCGCGC CGGCAAGCCC
GAGGACATCG CCGCGGCCGC CTCCTTCCTC ATCTCCGAGG AGGCCGGGTA CATCACCGGT
CAGATCATCG GTGTCAACGG TGGACGCAAC ACCTGA
|
|---|
| Protein sequence | MTERKTAVVT GGGSGIGRAI SLRLAKDGFA TAVLDINTES AEQVAKEARE LGYEAAAFGG
VDVSDRAQVD AAIDRIRATF GPVLVLVNNA GLTGTLGFQK ITDELWDRMI AVNLSGPFYL
TQAVLPDMID AHWGRIVNIS SSSAHSGQQY MVHYVSTKAG LIGFTKSLAL EYGPKGITVN
TIPPGFVDTP MLRDVEAKGF IGGSIADHAE RTPVRRAGKP EDIAAAASFL ISEEAGYITG
QIIGVNGGRN T
|
|---|
| |