| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Franean1_6513 |
|---|
| Symbol | |
|---|
| ID | 5674828 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. EAN1pec |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009921 |
|---|
| Strand | + |
|---|
| Start bp | 7921464 |
|---|
| End bp | 7922693 |
|---|
| Gene Length | 1230 bp |
|---|
| Protein Length | 409 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 74% |
|---|
| IMG OID | 641245361 |
|---|
| Product | ABC transporter related |
|---|
| Protein accession | YP_001510756 |
|---|
| Protein GI | 158318248 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG1131] ABC-type multidrug transport system, ATPase component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.0552468 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGTCCGG TTGCGCAGAC AGATGACGAT CGTCGCCGGA CGACGCGAGA TCGCGCTACG
GCCAGTCTGA TCGGCATGAC GACAACGACG AGCACCCCCG GTCTGGACGC CCGGACACGG
GCCCCGGTGG CCGACCCCCC GCTCACCGAG ATCCCGGACG GCCTCCGGGG CACCGGGCTC
CCGGGTGGCC CCCCGGCCGC GATCGACGTC CGCGGGCTGA CCAAGCGTTA CGGGCGGCGG
ACGGTCGTCC GGAATCTCGA CATCACCGTG CCGACCGGCG TGGTCGCCGG GTTCGTCGGC
CCGAACGGGG CGGGCAAGAC CACAACGCTG CGGATGCTGC TCGGCCTCGT CCGGCCGAGC
GAGGGCAGCG GGACGATCCT CGGCGAGCCG CTGGGCGAGC CGGCCCGGTA CCTGCCCCGG
GTGGGCGCGC TGATCGAGAG TCCGGCGCTG TACCCGACGC TGTCCGGACG CCGCAACCTC
GCGTCGCTGG CGGTGCTCGC CGGGCAGAAC CCGGCCGGCG CCGACGCGAT CCTGGACGAG
GTCGGGCTGG CCGGCCGCGG CGACGACGCC TTCCGCACCT ATTCGCTCGG GATGAAGCAG
CGGCTCGCCA TCGGCGCGGC GCTGCTCTCC GACCCGGACC TGCTCATCCT GGATGAGCCG
ACGAACGGCC TCGACCCCAG CGGCATCCGG CAGATGCGGG CGCTGGTCCG CTCGCTGGCC
GACGGCGAGC GGGACGCGGG CGCGAACGGC CGGCCGCGCA CCGTCCTGGT CTCCTCCCAC
CTCCTCTCGG AGGTCGAGCA GATCTGCGAC TGGATCATCG TGGTGGAGCA GGGCCGGCTC
GCCTACCAGG GCCCGACTGA CGGTCTGATG GCCTCCACGA CCAGCCGGGT CGAGCTGCGC
CCCGAGCACG CCGATTCCCT CGGGATGCTG GCGGACCTGG TGGCCGGCTT CGGGCTGCCC
GTGGACCGGG CGGGCAACCG GCTGCTCGTC GAGCTCGACC ACACCGCGCC GGCCGCCGTC
CCCGGGCCGG ACGGGCCGGA CGGGCCGGAC GCCGTCCTGG CCGGGCTCAA CCGGGCCGCG
CTCGCCCGCG GCATCACCCT CGTCGAGATC ACCCGGCAGC GGACCAGCCT CGAGGACCGC
TACCAGGGCC TGGTCGAAAG CACCCGAGAG ACCACCCGAA GCACCGGCAC CAGCAGCACG
AGCACCAGCA CCAGAGGGGA AGCCCGATGA
|
|---|
| Protein sequence | MRPVAQTDDD RRRTTRDRAT ASLIGMTTTT STPGLDARTR APVADPPLTE IPDGLRGTGL
PGGPPAAIDV RGLTKRYGRR TVVRNLDITV PTGVVAGFVG PNGAGKTTTL RMLLGLVRPS
EGSGTILGEP LGEPARYLPR VGALIESPAL YPTLSGRRNL ASLAVLAGQN PAGADAILDE
VGLAGRGDDA FRTYSLGMKQ RLAIGAALLS DPDLLILDEP TNGLDPSGIR QMRALVRSLA
DGERDAGANG RPRTVLVSSH LLSEVEQICD WIIVVEQGRL AYQGPTDGLM ASTTSRVELR
PEHADSLGML ADLVAGFGLP VDRAGNRLLV ELDHTAPAAV PGPDGPDGPD AVLAGLNRAA
LARGITLVEI TRQRTSLEDR YQGLVESTRE TTRSTGTSST STSTRGEAR
|
|---|
| |