Gene Franean1_6210 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagFranean1_6210 
Symbol 
ID5674529 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameFrankia sp. EAN1pec 
KingdomBacteria 
Replicon accessionNC_009921 
Strand
Start bp7544422 
End bp7545948 
Gene Length1527 bp 
Protein Length508 aa 
Translation table11 
GC content68% 
IMG OID641245062 
ProductEmrB/QacA family drug resistance transporter 
Protein accessionYP_001510458 
Protein GI158317950 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG2814] Arabinose efflux permease 
TIGRFAM ID[TIGR00711] drug resistance transporter, EmrB/QacA subfamily 


Plasmid Coverage information

Num covering plasmid clones21 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.208526 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCTGCTG ACAGCGCGAC CGCCGCCCCC GTGCGACCGG GCACCTCCGC GGCCCCGCCC 
ACGAGCCATC ACCTCGGCCT GGCTCTGTTC GTGATCGCCG CAGCACAGCT GGTGGTGGTC
CTCGACGCCA CGATCACCAA CATCGCTCTA CCCAGCATCC AGACCGATCT CGACGTGTCC
GACGCGAACC TGGCCTGGAT CGTCAACTCC TACGCGCTGG CCTTCGGTGG GCTGCTACTG
CTCGGCGGAC GCACCGGCGA TCTCTTCGGC CGGCGACGGA TGTTTCAGAC CGGCATCGCG
ATCTTTACGC TGGCCTCACT GCTGGGAGGA CTGGCCCCCA ACGAGGCCCT GTTGATCAGC
GCCCGCGTCC TGCAAGGCAT CGGCGCCGCG CTCGCTGCCC CCAACGCGCT GGCCCTGATC
ACTACGACAT TTCCACCCGG CAAGCCCCGC AATACGGCTA TGGGTGTGTA CGCCGCGATG
GGAGGCGTCG GCGCCACAGT CGGTCTGCTG TTGGGCGGCA CACTCACCGA CGTCCTGAGC
TGGCGATGGG TCTTCTTCAT CAACGTTCCC ATCGGCCTGG TCGTCCTCGT CGGAACCCGG
AGCCTCGTCG AGGCCGAACG CGACCCGGGC CGCGTGGACG TCCCCGGCGC TGTCACGGGA
ACGGGCGGCC TGATCGCACT GGTCTACGGC ATCACCCACG GCGGCGAGCA CGGCTGGAGC
GACAGCGCCA CCCTGACCGC CTTCGCCGTG GCGGCCGTGC TATTGGTGGC GTTCCTTCTC
ATCCAGGCCC GGACCGCCCA CCCGATGATG CCGCTACGGC TGTTCCAGGA CCGCAACCGG
TCTGGTTCCT ACGCCACGAT GCTGCTCATC GGTGCCGGCA TGTTCGCGAC CTTCTACTTC
CTGACGCTGT ACATGCAGCT CATCCTCGGC TACAGCCCCG TCCGGACCGG CTTCGCCTAC
CTGCCCTTCA GCTTCGGCAT CGCCATCGCC GCCGGTGTCA GCTCCAAACT GGTCACCCAC
GTCGCCCCAC GCGTGATCGC CGGACCGGGC CTGCTCGCGG CGGCCGCGGG CATGCTCTGG
TTCGCCGCCC TCGATCCGGA CTCCCCGTAC GCCGGACACC TGATGCCGGC GATGTTCCTC
ACCGGCCTCG GCCTCGGCCT GAGCTTCGTC CCCATGACAC TCGGCGCAGT CAGCGACGTT
GCACACGAGG ACTCCGGGAT CGCCTCAGCA CTCCTGAACA CCGCCCAGCA GATCGGCGGA
GCCCTCGGCC TCGCGGTCCT GTCAACCATC GCCACCTCCA CGGCCGACAA CAAGCTTCCC
GAAGCCGCCG GAGCCCTCTA CCAAGGCCTG GCCACGAACG ACGTCATCCT GATCGCGAGA
GCACAGGACG CACTGACCCA CGGCTACTCC ATGGCTTTCG CCGCCGCCGC CGCGATGTTC
CTCGCCGGTC TGATCGTCAC CGCCACCGCC ATCAACACTG CCAGGCAACA CCACATCGAG
GACGCGCCTC CCGCACACAT CGGCTGA
 
Protein sequence
MSADSATAAP VRPGTSAAPP TSHHLGLALF VIAAAQLVVV LDATITNIAL PSIQTDLDVS 
DANLAWIVNS YALAFGGLLL LGGRTGDLFG RRRMFQTGIA IFTLASLLGG LAPNEALLIS
ARVLQGIGAA LAAPNALALI TTTFPPGKPR NTAMGVYAAM GGVGATVGLL LGGTLTDVLS
WRWVFFINVP IGLVVLVGTR SLVEAERDPG RVDVPGAVTG TGGLIALVYG ITHGGEHGWS
DSATLTAFAV AAVLLVAFLL IQARTAHPMM PLRLFQDRNR SGSYATMLLI GAGMFATFYF
LTLYMQLILG YSPVRTGFAY LPFSFGIAIA AGVSSKLVTH VAPRVIAGPG LLAAAAGMLW
FAALDPDSPY AGHLMPAMFL TGLGLGLSFV PMTLGAVSDV AHEDSGIASA LLNTAQQIGG
ALGLAVLSTI ATSTADNKLP EAAGALYQGL ATNDVILIAR AQDALTHGYS MAFAAAAAMF
LAGLIVTATA INTARQHHIE DAPPAHIG