| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Franean1_5903 |
|---|
| Symbol | |
|---|
| ID | 5674224 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. EAN1pec |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009921 |
|---|
| Strand | + |
|---|
| Start bp | 7171422 |
|---|
| End bp | 7172948 |
|---|
| Gene Length | 1527 bp |
|---|
| Protein Length | 508 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 74% |
|---|
| IMG OID | 641244751 |
|---|
| Product | cell envelope-related transcriptional attenuator |
|---|
| Protein accession | YP_001510153 |
|---|
| Protein GI | 158317645 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1316] Transcriptional regulator |
|---|
| TIGRFAM ID | [TIGR00350] cell envelope-related function transcriptional attenuator common domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.667474 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGACGCC CGAGAGACGA GCTTTCAGCC GAAAGATCCG ACCTGACCTG GTCGGATGCG
GCCGAGCCGC CCGCGCCCGC GACCTGGCGT CCACCGAGCC CACGCGAGCC GCACTTCCGG
GAAGCGCGCG TCGCGGAGCC GAATCTCCCA GAGCCGTGTT CCGCGGAGCC GTACTTCACG
GAGGCGCGCC TCGCGGAGCC GACGCCCGCG ATCGGGTCGC ACGCCGCGCT GCCACCCGAG
CTGAGCCCGC GTCTTGTCCG GCGGCGGCGC TCGCCGCTGC GCCGGCTGTC CGTCACGCTG
GTCGCGATGA TCTCGCTGTG CGTCCTGGGG GCCACGTCGG TCGGGTGGGC GGCCTACCGG
CACTTCGACA GCGCGATCGA CCGCAAGGAC TGGACGCCCG TCGCCGGCGC CCGGCCCGCG
GTGGTCCCGG GCGACCTGAA CGTTCTCCTG CTCGGCAACG ACAGCAGGGA GGGCACCCAC
GGCGAGTTCG GCGACCCGGG CGGCACCCGG GCGGACACGA CGATCGTCGC CCACTTCGAC
GCGGACCGCT CCGTCACGCT GGTGTCCTTC CCGCGCGACA CGCTTGTGCC CGTCGTGCCC
GCGGCCGCCG CCACCGCCCC GGACGGCCTG TCGAAAATCG CGGACGTCAT CCCGCTCGCG
GGCGTGCCCG GCCTGATCTC GACCCTCGAG GCGTTCACCG GGCTCAAGAT CGACCACACC
GTCTCGATCA ACCTCGCCGG CTTCCGCGCG ATGACGGATG CCGTCGGCGG CGTCACGGTA
TGCGTCCTGC CGCTGCCCGA CGGCAGTACC CGCAACCTCC GGGACCGGGA GTCGGGGTGG
CGGGGCCAGC TCGGCGAGAA CCGGCTCAAC GGCGACCAGG CGCTGGCGTT CGTCCGCACC
CGCAAGGCGC TGGGCGAGGA GCGGCTGCGC ATCCTGCGCC AGCAGCAGTT CCTCTCCCGG
CTGCTCGACG CGGCGACGAG CGCCGGTGTG CTCACCAATC CCGCGCGGAT CACCAGTCTG
CTCGGCGCCG TCGGTGGCGC GCTGCAGATC AGTGACAGCC TGACCCAGAC GGAGATGCTC
CGGCTGGCGA AGCGGATCAG CGAGCTCGGC CCGGGCGGCC TGCGGTTCAT CACGATCCCG
ACGTATGTCC CGCTGCCCTC GGACGGCGCC GTCGACGAGA TGGGCACGAT CCCACCGCAC
GGCATGGTCC TCCTGCACGA CCCGGCCGGC CTGGAGGCGA TCGTGGGCCC GATGCGGGCC
ACGGCCGAGA ACGGCGGCGG CTCCGGATCG CCCACAGCGC CGGGCGTCTC CGTGGCCGCC
GGCGCCGCGC CGGGGGCAAC CACGCCGGGG GGAACGGCGC AGGCCTCCCC CTCCGCCAGC
CCAAGCGGCA CAGCGTCCGC CGGCACAGCG TCCGCCGGCA CGACGGCCGA CCGCACCGCG
GTCCCCGGCA CGACGCCGCT CCCCGGCACC GCCGCTGGGA CGGCATCGGC GGTGCCGGTG
CCCGCCGACA CCTCCTGCAC CCCCTGA
|
|---|
| Protein sequence | MRRPRDELSA ERSDLTWSDA AEPPAPATWR PPSPREPHFR EARVAEPNLP EPCSAEPYFT
EARLAEPTPA IGSHAALPPE LSPRLVRRRR SPLRRLSVTL VAMISLCVLG ATSVGWAAYR
HFDSAIDRKD WTPVAGARPA VVPGDLNVLL LGNDSREGTH GEFGDPGGTR ADTTIVAHFD
ADRSVTLVSF PRDTLVPVVP AAAATAPDGL SKIADVIPLA GVPGLISTLE AFTGLKIDHT
VSINLAGFRA MTDAVGGVTV CVLPLPDGST RNLRDRESGW RGQLGENRLN GDQALAFVRT
RKALGEERLR ILRQQQFLSR LLDAATSAGV LTNPARITSL LGAVGGALQI SDSLTQTEML
RLAKRISELG PGGLRFITIP TYVPLPSDGA VDEMGTIPPH GMVLLHDPAG LEAIVGPMRA
TAENGGGSGS PTAPGVSVAA GAAPGATTPG GTAQASPSAS PSGTASAGTA SAGTTADRTA
VPGTTPLPGT AAGTASAVPV PADTSCTP
|
|---|
| |