| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Franean1_5797 |
|---|
| Symbol | |
|---|
| ID | 5674120 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. EAN1pec |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009921 |
|---|
| Strand | - |
|---|
| Start bp | 7039352 |
|---|
| End bp | 7040221 |
|---|
| Gene Length | 870 bp |
|---|
| Protein Length | 289 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 641244647 |
|---|
| Product | polysaccharide deacetylase |
|---|
| Protein accession | YP_001510049 |
|---|
| Protein GI | 158317541 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG0726] Predicted xylanase/chitin deacetylase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCGGGA TGTCGACGGC CACGGCGGCT TCGCCGGACG GAACGTGGCC CACAAGCTCT
CCGGGCGACG GCTCGCCGTC GGCGCCGTGC CGGTCCGCGC TCCCCGTGCT GATGTACCAC
AGCATCGGTG ACTCGGTGAG CGCCGACTTC CGCAGGTGGG AGGTGCCCGC GGGGGTCTTC
GCCGAGCAGC TCGGCAGCCT TGTGGAGCAC GGCTACACCG TCACCAGCCT GTCCGACGCG
CTGGCGAACC CGCGGGAGCG CCAGGTCGCG GTGACCTTCG ACGACGGCTT CGAGGATTTC
GTCACCAGGG CGCTGCCCGT TCTCGCCGAG TTCGGTGCGG CGGCGACCCT GTACGTACCG
ACGGCCTACG TCGGTCAGCG GGCGCGCTGG CTGGAGGCGT ACGCCGAGCG TGAGCTGGCC
CTGCTCGACT GGCCCGCGCT GGCCGCGCTG GCCGACCGGG GGATCGAGAT CGGCGCCCAC
GGCCACCGGC ACGTGGAGCT GGACGTCGTG CCGCCCGCGA TCGCGCGTTA CGACGTCACG
GCGAGCATGC GCACGATCGC GGAGGAGACC GGTCACCGTC CGGACAGTTT CTGCTATCCG
TTCGGTTACC ATTCACCCGG TGTCCGGCAA ATCGTCGAAA GCGCCGGATT CGGTTCGGCG
TGCGAGGTCG GATACAGAAT CCATCGCCGG AGCCGTTCGC GTTTCCAGGT CAGCCGCCTG
ATCGTCGGCC GGTCAGTCGG CGCGGCCGAC ATTCTGCGGC TCGTGACGGA GGGGCATCGC
GACGCGGCTC TCGCCGCGCG GCGCAGGCTC CGGGCCGGAT GGCGTGCCTA CCGTTCGATC
CGGTGGCGCC TGGGTGTGGA AACTGCGTGA
|
|---|
| Protein sequence | MTGMSTATAA SPDGTWPTSS PGDGSPSAPC RSALPVLMYH SIGDSVSADF RRWEVPAGVF
AEQLGSLVEH GYTVTSLSDA LANPRERQVA VTFDDGFEDF VTRALPVLAE FGAAATLYVP
TAYVGQRARW LEAYAERELA LLDWPALAAL ADRGIEIGAH GHRHVELDVV PPAIARYDVT
ASMRTIAEET GHRPDSFCYP FGYHSPGVRQ IVESAGFGSA CEVGYRIHRR SRSRFQVSRL
IVGRSVGAAD ILRLVTEGHR DAALAARRRL RAGWRAYRSI RWRLGVETA
|
|---|
| |