Gene Franean1_5751 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagFranean1_5751 
Symbol 
ID5674077 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameFrankia sp. EAN1pec 
KingdomBacteria 
Replicon accessionNC_009921 
Strand
Start bp6988186 
End bp6989646 
Gene Length1461 bp 
Protein Length486 aa 
Translation table11 
GC content71% 
IMG OID641244604 
Productmajor facilitator transporter 
Protein accessionYP_001510007 
Protein GI158317499 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG2814] Arabinose efflux permease 
TIGRFAM ID[TIGR00711] drug resistance transporter, EmrB/QacA subfamily 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones23 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACCTCTG GCACGAGCAC GCCCACCGCA ACCGGGGAAG CATTGGCAGA CCCGACTACG 
GCGGCCGAGG CCACAGCCTG GGGCACGCTG GCCGTGCTGA TGGTCGGAAC CTTCATCACC
GTCCTCGACT ACTTCATCGC CAACGTCGCC GCGCCGTCCG TCCAGCGTGA CCTGAACGCC
AGCTCGGCGC AGATCCAGGG CGTGATTGTC GGCTACGGCG TCGCGTTCAC CGCCGGCATG
ATCACCGGCG GCCGGCTGGG CGACGTCTAC GGCCGTCGGC GCATGTTCGC GCTGGGCCTC
CTGCTGTTCA CGGTGGCCTC GGCGGCCTGT GGCGTCGCGC CCAACGCCGA AGCGCTGATC
GTCGCTCGGG TGGTACAGGG AACCGCCGCC GCGCTGATGG TTCCGCAGGT GCTCGGCATC
TTGGGCACGG TCTACACCGG GCCGAGTCGG GCGCAGGCAT TCAACGTGTA CGGCCTCGTC
ATCGGGCTTG CCGGCGTGTT CGGGCAGGTG ATCGGCGGAG TGCTCATCAC GGTCGACGTC
GCGGGCCTCG ACTGGCGGGC GGTGTTCCTG CTGAACGTGC CGATCTGCCT GGTGGCGTTG
GCCTACACCT ACCGCGTGGT GCCCGAGTCG CGCGGCTCGG CCCGCACGCG TCTCGACCTG
ACCGGCGCGG CGTTGGTGAC GGCGACGCTG GTGCTCCTGG TGGTCTCCCT GGTCGAAGGG
CGCGAGCAGG GGTGGCCGGC GTGGAGCTTC GGCTGCCTGG CTCTCGCGGC GGTACTGTCC
GGCGCGTCCG TCCTCCACCT GCGTCGCCGT GCCGCACGCG GCGCTGACCC GTTGATCGAC
CCGGCGTTGT TCCGGGGGCG CGGCTTCTCG GTAGGGCTGG CCGCCATGGT GGCCTACTTC
CTGGCGATGG GTTCCTTCTT CTTCCTGCTG GCCCTCTACC TGCAGCAGGG CCGAGGCCTG
TCGCCGCTGG AGTCCGGGCT GCTGTTCCTG GCACTGGGAG CGGGCTACTT CGGCTCGTCG
TTGGCGTCGA TGCAGCTTGT CGCGCGGATG GGCCGGTGGC TCGTGGTGGC CGGTCCGTTG
ACGATCGCGG TCGGCTACAC GCTGGTCGGG ATCACGGTCT GGGCGACCGG CTCGACCGGG
AGCCCGGCGT GGCTGGTGCC GGCGTTGCTC GTTGCCGGGC TCGGCATGGG GATGACCACC
GGCCCGCTCA CGAACGTCGT CCTGACCGGT GTAGCGCCCG AACACGCCGC CTCCGCGTCG
GGAGCGGCCA ACACCGCGCA GGAGGGCGGT GCGGCGCTGG GCGTGGCGGT CGCTGGGGCG
GTCTTCTACC CCGCCCTCGG CGTCGCGGCG CGCGCCACCG ACTATCCGGA CGCCTTCGAC
GTCGCGTTGA TCCCGCTGGT TGCCTGCTGT CTCGTCGCCG CGACGCTGGC GCTGTTGCTG
CCCGGCCGCC GCGCGCAGTA G
 
Protein sequence
MTSGTSTPTA TGEALADPTT AAEATAWGTL AVLMVGTFIT VLDYFIANVA APSVQRDLNA 
SSAQIQGVIV GYGVAFTAGM ITGGRLGDVY GRRRMFALGL LLFTVASAAC GVAPNAEALI
VARVVQGTAA ALMVPQVLGI LGTVYTGPSR AQAFNVYGLV IGLAGVFGQV IGGVLITVDV
AGLDWRAVFL LNVPICLVAL AYTYRVVPES RGSARTRLDL TGAALVTATL VLLVVSLVEG
REQGWPAWSF GCLALAAVLS GASVLHLRRR AARGADPLID PALFRGRGFS VGLAAMVAYF
LAMGSFFFLL ALYLQQGRGL SPLESGLLFL ALGAGYFGSS LASMQLVARM GRWLVVAGPL
TIAVGYTLVG ITVWATGSTG SPAWLVPALL VAGLGMGMTT GPLTNVVLTG VAPEHAASAS
GAANTAQEGG AALGVAVAGA VFYPALGVAA RATDYPDAFD VALIPLVACC LVAATLALLL
PGRRAQ