| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Franean1_5316 |
|---|
| Symbol | |
|---|
| ID | 5673650 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. EAN1pec |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009921 |
|---|
| Strand | + |
|---|
| Start bp | 6403091 |
|---|
| End bp | 6404875 |
|---|
| Gene Length | 1785 bp |
|---|
| Protein Length | 594 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 75% |
|---|
| IMG OID | 641244173 |
|---|
| Product | alpha amylase catalytic region |
|---|
| Protein accession | YP_001509580 |
|---|
| Protein GI | 158317072 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG0366] Glycosidases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.0561676 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.278605 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGATCCCG TTGTCGCATA CCGTGCGGGC GAACCCGGGC AGCCCGGCGG CCGCTCCGGC
CCGGCCGCGC CACCAGCGGG AACCGAGGAG ACCGATTACT CGGCGTGGTG GCACGACGCC
GTGATGTACG AGGTCTACGT CCGCAGCTTC GCCGACGCCG ACGGCGACGG GGTCGGCGAC
ATCGAGGGCA TCCGCCGGCG CCTGCCCGAT CTCGCCGACC TGGGCGTCGA CGGGATCTGG
GTCAGCCCCT TCTACCGCTC CCCCATGGCC GATCACGGCT ACGACGTGGC CGACCACACC
GACGTCGATC CCTTGTTCGG CACTCTCTCG GACATCGACG CGCTGCTGCG CGACGCCCAC
GAGGCCGGCC TGAAAGTCGT CGTCGACCTG GTCCCGAACC ACTCCAGCAG CGCGCACCCC
GCCTTCCAGG CGGCGCTCGC GGCCGGGCCG GACGCGCCGG AGCGGGACCT CTACCTTTTC
CGGGACGGGC GCGGCCCGGA CGGTGCGCTC CCCCCGAACA ACTGGATCTC GGTGTTCGGT
GGCCCCGCCT GGACGAGGGT TCCGGACGGC CAGTGGTACC TGCACCTGTT CGCCCCGGAG
CAGCCGGACT GGAACTGGCA GCATCCGCGG GTGCGGGCGG CGCACGCCGA GATCATCCGA
TTCTGGCTCG ACCGGGGGGT CGACGGCTTC CGGATCGACG TCTCGCACGG CCTGGTCAAG
GACGGCGAGC TGCGCGACCA TCCGACCGGC GCGCTCCCCA CGCCGGAGAC CGGCTTCCGG
GAGGAGATCG AGCCGCACGC GTGGGATCAG GACGGCGTCC ACGAGATCTA CCGCGAGTGG
CGGGCGATCG TCGACGCCCA CGACCGGCGC GACGGCCGAC AGCGGGTGCT CGTCGGCGAG
ACCTGGGTCG CCGACCCGGG GCGCCTCGCC CGGTACGTCC GTCCCGACGA GCTGCACCTG
ACCTTCACGT TCTCGCTGCT GTACGCGCCG TTCTCCGCCC CGGCGTGGCG GGCGGCGATC
GATGCCGCCC GGGCCGCGAC AGCCGCCGTC TGCGCGCCGC CGACCTGGGT GCTGGCCAAC
CACGACGTCG TCCGTCCGGT CAGCCGCTAC GGCGGCGGCG AGACCGGCCT GCGCCGGGCC
CGGGCGGCGC TGCTGACGCT GCTGGCGCTG CCCGGCACGG TCTACCTGTA CCAGGGCGAC
GAACTCGGCC TGCCGCAGGT CGACATCCCG CCCGAGGCCC GCCAGGACCC GGTCTGGGAA
CGGTCCGGCC ACACCTCGCC CGGCCGGGAC GGCGCACGCG TGCCGCTGCC GTGGTCCGGC
GACGCGCCTC CGTACGGGTT CAGCGCCGGG GCAGCCGAGC CGTGGCTCCC GCAACCGCCC
GACTGGGCGA CGCTGACCGC GTCCGCCCAG TCCGTGGACC CGATGTCGAC CAGGGTGCTC
GTCCGCGGCG CGCTGGCGCT ACGCCGCGCG CTCCCCTTCC TCGGCGGACC GGCCGGGCCG
GGCAGCGCGG CCGAGCCGGC CGAGCCGGGG CACTCGGGCG AGCCGGGGCG GCCGGCAGGC
ACGCGGCCCG GGTTCCGCTG GCGGGACGAT CTGCCCGCGG ACTGCCTGGC CTTCGACCGG
ACGTCCGCCG CCGGCGCCCT GACCTGTGTG ATGGCCACGC GGAGCGAGAT ACGCCTGGAG
ATCGCCGGCC GGCTGGTGCT GGCGAGCGGG CCAGTCGGCT ACGACGGCGC GACGCTCGTC
CTGCCACCGG ACACCACCGC GTGGGTCATC CCCCGTTCGG GTTGA
|
|---|
| Protein sequence | MDPVVAYRAG EPGQPGGRSG PAAPPAGTEE TDYSAWWHDA VMYEVYVRSF ADADGDGVGD
IEGIRRRLPD LADLGVDGIW VSPFYRSPMA DHGYDVADHT DVDPLFGTLS DIDALLRDAH
EAGLKVVVDL VPNHSSSAHP AFQAALAAGP DAPERDLYLF RDGRGPDGAL PPNNWISVFG
GPAWTRVPDG QWYLHLFAPE QPDWNWQHPR VRAAHAEIIR FWLDRGVDGF RIDVSHGLVK
DGELRDHPTG ALPTPETGFR EEIEPHAWDQ DGVHEIYREW RAIVDAHDRR DGRQRVLVGE
TWVADPGRLA RYVRPDELHL TFTFSLLYAP FSAPAWRAAI DAARAATAAV CAPPTWVLAN
HDVVRPVSRY GGGETGLRRA RAALLTLLAL PGTVYLYQGD ELGLPQVDIP PEARQDPVWE
RSGHTSPGRD GARVPLPWSG DAPPYGFSAG AAEPWLPQPP DWATLTASAQ SVDPMSTRVL
VRGALALRRA LPFLGGPAGP GSAAEPAEPG HSGEPGRPAG TRPGFRWRDD LPADCLAFDR
TSAAGALTCV MATRSEIRLE IAGRLVLASG PVGYDGATLV LPPDTTAWVI PRSG
|
|---|
| |