| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Franean1_5180 |
|---|
| Symbol | |
|---|
| ID | 5673514 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. EAN1pec |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009921 |
|---|
| Strand | + |
|---|
| Start bp | 6216740 |
|---|
| End bp | 6218908 |
|---|
| Gene Length | 2169 bp |
|---|
| Protein Length | 722 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 73% |
|---|
| IMG OID | 641244034 |
|---|
| Product | 3-hydroxyacyl-CoA dehydrogenase NAD-binding |
|---|
| Protein accession | YP_001509444 |
|---|
| Protein GI | 158316936 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG1024] Enoyl-CoA hydratase/carnithine racemase
[COG1250] 3-hydroxyacyl-CoA dehydrogenase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.480288 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCAGCG CCGCGATGAC CCTGGAGCAC CCGGACGAGG TCGTCACGCA GGCCCATGTC
CGGTACGCAC AACTGTCCGG CGTGAGCGGC CCGGTCGCGC TCATCACCCT GGACAACGGG
CAGGACCACA CCCGCCCGAG CACCTTCGGC CCGGGCGGGC TGCGGTCACT GCTCACCGCC
GTCGAGGAGA TCGAGGCCCA CGACCCGCCG GTGGCGGCGG TGGCGGTGAC CGGCAAGCCG
TTCATCTTCT GCGCCGGCGC GGACCTCTCC TACCGGTCGT CGCTGACCGA CCCGGCCGAG
GTCCGGCCGA AGCTCACCGC GCTCGGCGAG CTCGGGCACA CCGCGCTGCG CCGGGTCGGC
GAGGGCCGGC TGGGCGACCG GCGGGTCCCC ACCTTCGCGC TGGTCAACGG CGCCGCGATG
GGCGGCGGCC TGGAGCTGGC GCTGCACTGC GACTACCGGG CGATCTCCGC CGGTGCCGCG
CCGATCGCGC TGCCCGAGGT CTTCCTCGGC CTGGTGCCGG CCTGGGGCGG CACCCAGCTG
CTGCCGAACC TGGTCGGCCC GGAGAACGCG GTCACCATCA TGATCGACAA CGCGCTCAGC
CAGAACCGGA CGCTGCGCGG CCCCAAGGCG TTCGCGCTCG GCCTCGGTGA CGTCCTGCTG
GATGCCGCGG ACTTCCTCGA GGAGGCGCTG CACTGGGTCG GCCAGGTGCT GCGGGGCGAG
GTGGACCCGA CCAAGGGCCG CCGTCCCGTC GAGCAGGGTG CCGCCTGGGC TGCGGCGCTG
GAGCGCGGTC GCGTCCTCGC GGACGCCCGG CTGCACGGCG CGGCCCCGGC CGCCTACCGC
GCGCTCGAGC TGATGGCCCT GGCGGAGACC GCGGACGCCG ACACGGGGTA CGCCGCCGAG
ACGGCGGCGC TGGCCGATCT CGGGTCCAGC GAGGAACTCG TCGCCGGGCT CTACTCCTTC
GACCTGGTGA ACCGGCGCGC CAAGCGGCCG GTCGGCGGGC CCGACCGCTC GCTGGCCCAG
GCGGTGACCA AGGTCGGCGT GGTCGGCGCG GGGCTGATGG CCAGCCAGCT CGGGCTGCTG
TTCGCCCAGC GGCTGGAGGT GCCGGTCGTC CTCACCGACC TCGACCAGGC GCGTCTCGAC
GCGGGAGTCG CACACGTCCA CAGCGAGATC GACAACCTGC TGCTGCGCGG GCGGATCTCC
CACGACCGCG CGAACCGGCT CAAGGCCTCC GTGACCGGCT CACTGACCAA GGACGCGTTC
GCCGACGCCG ACCTGATCAT CGAGGCCGTC TTCGAGGACA TGTCGGTCAA GAAGGCGGTG
CTCGCCGAGC TCGAGTCCGT GGTGAAGCCG GAGACGCTGC TGCTCACCAA CACCTCGGCC
CTCTCGGTGA CCGAGATGGC CGCCGACCTG ACCCATCCGG AGCGGGTCGC CGGGCTGCAC
TTCTTCAACC CGGTGGCGGT GCTGCCCCTG GTCGAGGTCG TCCGCACCCC GCGGACCGAC
GACACCACGA TCGCGACCAC GCTGCAGGTC GCGAAGCAGC TGAAGAAGAA CGCGGTGCTG
GTCGCAGACG CGCCGGCCTT CGTGGTGAAC CGCCTCCTCA CCCGGTTCAT GGGCGAGGTG
CTCGCGGCCA CCGAGACCGG AACCCCGATC GAGCAGGCCG ACGGCGCGCT CGACCCGCTC
GGACTGCCGA TGTCGCCGCT GGTCCTGCTC TCGCTGGTCG GCCCGCCGGT CGCACTGCAC
GTGGCCCGGA CCCTGCACCA GGCCATGCCC GACCGGTTCC GCACGCCGGA CGGCCTGGCG
CGGGTCGTGG CCGCCGGGAA GAGCAGCTTC TACACGGCCG GACCGGGCGG CGAGCAGATC
GTCGACCCGG AGGTCGCCGA TCTCGTCCGG AGCATGGACG ACGGCACCGC GCCGACCGCT
CGGGAGGGTG CGGCGATGAC GCCCGAGCAG GTCCGCGAGG CGGCGCTCTC CGCGCTGGCC
CAGGAGATAA GGCTCCTGCT GGACGAGGGC GTCGTGGCCG AGGCGGCGGA CGTCGACCTG
TGCATGATCC TCGGCGCCGG CTGGCCCTTC CACCTCGGCG GCATCACCCC GTACCTGGAC
CGCACCGGCA TCAGCGAACG CGTGACCGGT CGCCGTTTCA ACCCTCCGGG CGTCGCCACC
GTCGCCTGA
|
|---|
| Protein sequence | MSSAAMTLEH PDEVVTQAHV RYAQLSGVSG PVALITLDNG QDHTRPSTFG PGGLRSLLTA
VEEIEAHDPP VAAVAVTGKP FIFCAGADLS YRSSLTDPAE VRPKLTALGE LGHTALRRVG
EGRLGDRRVP TFALVNGAAM GGGLELALHC DYRAISAGAA PIALPEVFLG LVPAWGGTQL
LPNLVGPENA VTIMIDNALS QNRTLRGPKA FALGLGDVLL DAADFLEEAL HWVGQVLRGE
VDPTKGRRPV EQGAAWAAAL ERGRVLADAR LHGAAPAAYR ALELMALAET ADADTGYAAE
TAALADLGSS EELVAGLYSF DLVNRRAKRP VGGPDRSLAQ AVTKVGVVGA GLMASQLGLL
FAQRLEVPVV LTDLDQARLD AGVAHVHSEI DNLLLRGRIS HDRANRLKAS VTGSLTKDAF
ADADLIIEAV FEDMSVKKAV LAELESVVKP ETLLLTNTSA LSVTEMAADL THPERVAGLH
FFNPVAVLPL VEVVRTPRTD DTTIATTLQV AKQLKKNAVL VADAPAFVVN RLLTRFMGEV
LAATETGTPI EQADGALDPL GLPMSPLVLL SLVGPPVALH VARTLHQAMP DRFRTPDGLA
RVVAAGKSSF YTAGPGGEQI VDPEVADLVR SMDDGTAPTA REGAAMTPEQ VREAALSALA
QEIRLLLDEG VVAEAADVDL CMILGAGWPF HLGGITPYLD RTGISERVTG RRFNPPGVAT
VA
|
|---|
| |