| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Franean1_5136 |
|---|
| Symbol | |
|---|
| ID | 5673470 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. EAN1pec |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009921 |
|---|
| Strand | + |
|---|
| Start bp | 6153647 |
|---|
| End bp | 6155113 |
|---|
| Gene Length | 1467 bp |
|---|
| Protein Length | 488 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 73% |
|---|
| IMG OID | 641243986 |
|---|
| Product | XRE family transcriptional regulator |
|---|
| Protein accession | YP_001509400 |
|---|
| Protein GI | 158316892 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | [TIGR01409] Tat (twin-arginine translocation) pathway signal sequence |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 7 |
|---|
| Fosmid unclonability p-value | 0.033803 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAGCGCT CGACAGGACC GTCGGCTGGT CGTGCCACGC CGAGGACTGC GCAGGCGAAC
GACCACAGGC CGGCATCGGC CGGGATCACC CGCACTCCGA ACGTGCGGTT GCGTACCTGC
CGGGAGGAAC GCGGCTGGTC GCAGGAACGA CTGGCCAGTG AGATCCGGCG TTTTTCCGTC
ATACACGAGG GCCGCGAGGC CGGCGTGACG GGAAATATGA TCTGCAAATG GGAGAAGGGC
GATAAAAAGC CCAGCCTTCG TTACCAGCGG CTCCTGCGGG CCCTGTTCGA GCGGTCGTCG
GCGGAGCTCG GCTTCGTGGA CGACGACCCC AACACAGGGC TTCCGGCGCA CGCGTCCGGC
GCGGACAATG CCTCCCGGGA GATCGTGCCG GCCGGCACGC TGCTCCTGCA GGCCGCCGAG
GCCGACGCCG GCCTGCACAA CGCTCTCCCG GTGGAGCGGC GTGGGTTCCT GCGGCTGTTC
GCGGCGGCCG GCGGTGTCGC GGTCGTCCCG CTGGGCATGG GTGGCGACGA CGCGCCCTGG
GAGCGGCTGT CCGCCGCGCT GCGCCGGCGC ACCACGGTCA CCCCCGAGCT CGCGGACGAG
CTGAGCCGCT GCACCGCGGG CCTGTACGGC CTCGAGGAGC GGGTTCCGGC CCGGGCCCTG
TTCTCCCGGG TCACCGGGCA TCTGGGGACG CTCACGCAGC TCCTGGAGTC CAGCGGCCGC
TCGCCGGTCC GCCGGGACCT CGCCTCCACG GCCGGCGAGA CCGCCGCCCT GGCCGGTTGG
CTCGCCTTCG ACATGAACGA CGTCCCCTCG GCCCTGGCCT ACTACCGGGT CGCCATCGAG
GCGGCGCGGG AGGCCGACGA CAGCGCGCTG TGGGCCTGCG TGCTGGGCTA CGAGAGCTAT
CACAGCGCGG GCATCGGCCG TCACGACCAG GCCTGCGCGC TGCTGGCCGA GGCGCAGCGC
CGTGCCGCGA CGGGCAGCAC CGTCATGACG AAGGCCTGGC TGGCCGGGCG GGAGGCCGAG
GAGCAGGCGG CCCGCGGTGA GGGGCGGGCC GCGCTGGCCG CCCTCGACCG CGCCCAGGAC
GCGTTCGACC GCGCCGACGA CGGCGACCGG GTCTGGACGC AGTTCTTCGA CCGCGGCCGT
CTGGACGGCA TCAAGGTCAC GACCTACACC CGGCTGCGGC GCCCGGCCGC GGCCCACGCG
GCGGCGACCG AGGCACTGCG CGCCACCACC CCGCACAGCG GCACCAAGAA GCGGTCCCTG
CTGCTCGGTG ACATCGCCGA GGTCCACATC CAGCGCCGGG AGATCGAGGC CGCCACCCAG
TACGCGACCG AGTCGCTCGC CATCGTCGCG GCGACTGACT TCTCCCTCGG GCTGACCAGG
GTCCGCCGCG TCCGGGAGCA TCTGCGGCCC TGGCAGCAGA CGCAGGCCGT CCGCGACCTC
GACGAGCAGC TCCGCGCGCT CACCTGA
|
|---|
| Protein sequence | MQRSTGPSAG RATPRTAQAN DHRPASAGIT RTPNVRLRTC REERGWSQER LASEIRRFSV
IHEGREAGVT GNMICKWEKG DKKPSLRYQR LLRALFERSS AELGFVDDDP NTGLPAHASG
ADNASREIVP AGTLLLQAAE ADAGLHNALP VERRGFLRLF AAAGGVAVVP LGMGGDDAPW
ERLSAALRRR TTVTPELADE LSRCTAGLYG LEERVPARAL FSRVTGHLGT LTQLLESSGR
SPVRRDLAST AGETAALAGW LAFDMNDVPS ALAYYRVAIE AAREADDSAL WACVLGYESY
HSAGIGRHDQ ACALLAEAQR RAATGSTVMT KAWLAGREAE EQAARGEGRA ALAALDRAQD
AFDRADDGDR VWTQFFDRGR LDGIKVTTYT RLRRPAAAHA AATEALRATT PHSGTKKRSL
LLGDIAEVHI QRREIEAATQ YATESLAIVA ATDFSLGLTR VRRVREHLRP WQQTQAVRDL
DEQLRALT
|
|---|
| |