| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Franean1_4561 |
|---|
| Symbol | |
|---|
| ID | 5672908 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. EAN1pec |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009921 |
|---|
| Strand | + |
|---|
| Start bp | 5441481 |
|---|
| End bp | 5442782 |
|---|
| Gene Length | 1302 bp |
|---|
| Protein Length | 433 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 641243424 |
|---|
| Product | acyl-CoA dehydrogenase domain-containing protein |
|---|
| Protein accession | YP_001508840 |
|---|
| Protein GI | 158316332 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG1960] Acyl-CoA dehydrogenases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTGGGATT TCTCGACCGA GCCTGAGTTC CAGGAGAAGC TGGACTGGAT GGCACGATTC
GTCCGCGAGG AGTGCGAACC CCTCGACCTG CTCTTCCCGC ACGGGGGCGA TCCGTACGAC
GTCCACAACA AGGCGTCGCG AGCCATCCTG AAGCCGCTGC AGGCGCAGGT CCGCGAGCAG
GGGCTGTGGG CCTGTCACCT GGGACCGGAG CTGGGCGGCC ACGGCTTCGG CCAGATGAAG
CTCGCGCTGA TGAACGAGAT CCTCGGCCGC TCCTACTGGG CGCCCACCGT CTTCGGCACG
GCGGCTCCCG ACACCGGCAA CGCCGAGATC CTCGCGATGT TCGGCACGCC GGAGCAGAAG
CAGCGCTACC TGCAGCCGCT GCTCGACGGC GAGATCGTCT CCTGCTTCTC GATGACCGAG
CCGCAGGGCG GCGCCGACCC GAAGGAGTTC GCCTGCACGG CGACCCGGGA CGGCGACGAA
TGGGTCATCG AGGGCGAGAA GTGGTTCTCC TCGAACGCCC GTTACGCGGC TTTCCTGATC
GTCATGGCGG TCACCGACCT CGACGCCGCC CCGCACCGGC GGATGTCCAT GCTCGTGGTG
CCCGCCGAGA CGCCCGGCAT CGAGATCCTG CGCAACGTCG GCACCATCAA CGAGCGGGAC
GACTTCGACG AGGGCATCCA CGGCTACATC CGCTACAACC GGGTGCGGGT CCCGCTGGAC
GCCATGCTCG GCGCGCCGGG CGAGGGTTTC AAGGTCGCCC AGGCCCGGCT CGGCGGCGGC
CGCGTCCACC ACGCCATGCG GGTCGTGGGC AAGTGCCAGC GGGCCTTCGA CATGCTGTGC
GAGCGGGCGC TGTCGCGTCA CACGCAGGGC AAGGTCCTCG CCGAGCACCA GTTCGTGCAG
GGCTTCGTCG CCGACTCGGC GATCCAGCTC CAGCAGTTCC GGCTGCTCGT CCTGCAGACG
GCGTGGATCA TCGACACCCA GCCGCACGGC GCGGCCCGCA CCCACATCGC GATGTGCAAG
GTCGCCCTGG CGCAGGTACA GCACGACATC ATCCAGCGGG CACTGCACCT GCACGGCTCG
CTGGGCACCA CCCACGAGAC CCCGCTCGGC GCCTGGTGGG CCGGCGTACC GCAGCTCGCC
CTCGCCGACG GGCCCACCGA GGTGCACAAG GCCACCGTCG CCAAGCAGGT CCTGAAGGGC
TACCGGCCGG CGCCCGGCCT CTTCCCCACC GAGCACCTGC CGACCCGGCG CGCCGCCGCC
CGCGAGCGGT ACGCGGACGT TCTCCAGGAA TTCGGGCTGT GA
|
|---|
| Protein sequence | MWDFSTEPEF QEKLDWMARF VREECEPLDL LFPHGGDPYD VHNKASRAIL KPLQAQVREQ
GLWACHLGPE LGGHGFGQMK LALMNEILGR SYWAPTVFGT AAPDTGNAEI LAMFGTPEQK
QRYLQPLLDG EIVSCFSMTE PQGGADPKEF ACTATRDGDE WVIEGEKWFS SNARYAAFLI
VMAVTDLDAA PHRRMSMLVV PAETPGIEIL RNVGTINERD DFDEGIHGYI RYNRVRVPLD
AMLGAPGEGF KVAQARLGGG RVHHAMRVVG KCQRAFDMLC ERALSRHTQG KVLAEHQFVQ
GFVADSAIQL QQFRLLVLQT AWIIDTQPHG AARTHIAMCK VALAQVQHDI IQRALHLHGS
LGTTHETPLG AWWAGVPQLA LADGPTEVHK ATVAKQVLKG YRPAPGLFPT EHLPTRRAAA
RERYADVLQE FGL
|
|---|
| |