| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Franean1_4497 |
|---|
| Symbol | |
|---|
| ID | 5672847 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. EAN1pec |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009921 |
|---|
| Strand | + |
|---|
| Start bp | 5364364 |
|---|
| End bp | 5366811 |
|---|
| Gene Length | 2448 bp |
|---|
| Protein Length | 815 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 641243364 |
|---|
| Product | acyl-CoA dehydrogenase domain-containing protein |
|---|
| Protein accession | YP_001508780 |
|---|
| Protein GI | 158316272 |
|---|
| COG category | [I] Lipid transport and metabolism
[R] General function prediction only |
|---|
| COG ID | [COG1960] Acyl-CoA dehydrogenases
[COG3173] Predicted aminoglycoside phosphotransferase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGTCCTGGG ATTTCGAGAC CGACCCCGAA TTCGCGCAGC AGCTGGAGTG GATTGATCAG
TTCGTCCGGG ACGAGATCGA GCCGGTCGAC CTGCTCGTCA CGAACTACGG CTTCGATCTC
TCCGACCCGG TTCGCCAAGC CCTCATTCCA CCCCTGCAGC AGATGGTGCA TGAGCGCAAC
CTCTGGGCCT GCCACCTGGG CCCCAACCTG GGCGGCAAGG GCTACGGCCA GGTCAAGCTG
GCGCTGATGA ACGAGATCCT CGGGCGATCG CAGTGCGCAC CCATCGTGTT CGGCTGCCAG
GCCCCGGACT CCGGGAACGC GGAGATCCTC GCGCACTACG GCAGCGAACG GCTCAAAGAG
ACCTATCTCC GCCCGCTGGT GGCGGGCGAG GTCGTCAGCT GCTACTCGAT GACCGAGCCC
GAGGGCGGGT CGGACCCGAC GCAGTTCCGC ACCAGCGCCG TTCCCGACGG CGACGAGTGG
GTCATCAACG GGACCAAGTG GTACTCGTCG CACTCCCGCT TCGCGTCGTT CATCATCGTG
CTGGCGGTCA CCGACCCCGA CGCCGAGCCG CACCGGCGGA TGTCGATGTT CGTCGTGCCC
GCGGACGCCC CGGGGCTGGA AACCATCCGC AACGTCGCCC TGTTCGGTCA CGAGCGGCAC
GACGGAGGGC ACGGCTACCT CCGCTACAAC AACGTCCGCG TTCCGGCCGA CCATCTGCTC
GGCAAGCGGG GCGACGGCTT CGTCGTGTCC CAGACCCGGC TCGGTGGCGG TCGCATCCAC
CACGCGATGC GCACTGTCGG TCTCGTCCGC AAGGCGCTCG ACATGATGTG CGAGCGCGTG
CTGTCCCGGT ACACGCAGGG CGAGCGGCTC GCCGACAAGC AGATGGTGCA GGAGATGCTC
GCCGACTCCT GGACCCAGCT CGAGCAGTTC CGCCTCCTGG TCCTGCAGAC CGCCTGGAAG
ATCGACAAGT ACGACGACTA CCGCAAGGTC CGCAAGGACA TCGCCGCGGT AAAGGCCACG
ATGCCGAAGG TGCTCAACGA CGTGGCCGGC CGGGCCCTGC AGCTGCACGG CTCGCTGGGC
ACATCCGACG AGATGCCGTT CGGCGATTGG ATCATGGAGT CGTACCGGAT GGGCCTGGCG
GACGGCGCCA CCGAGATCCA CAAGATCACC GTGGCCAAGC AGCTCCTGCG CGGGCGCACG
CCGGCGCCCG GGCTGTTCCC CACCGGGCAC CTGCCCGCGC TACGGGCGGC GGCCGAGGCC
AAGTTCGCCG ACCGGCTCGC CGCCGTGCGC GGCTCCCATG GCTCCTCCGG CCCGTCGGCC
GCGGTCGCCC CCAGCACCGC GGCAGAGACG CCCGTGACTG ACGACGCCCC GCGGCCCGAT
GACATGCCGG AGATCGCGGA CGTCCGGCCC GGCGAGGAGC TCGACTGGGA CCGGCTGGTC
ACCTACCTGT CGACAGCCCT CGGCGTCGCG GCCGGCGCCT GGTCGGTGAA GCAGTTCCCG
AACGGCTCGG CGAACCTCAC CTACCTCGTG CACGTCAACG ACGAACTCAG CGTCGTCGTC
CGCCGGCCGC CGCTGGGCAC GATCGCCGCC GGCGCGCACG ACATGTCCCG CGAGCACCGG
GTGCTCTCCC GGCTACCCAA CGCCTACCCG CGGGCGCCCC GGTCCCTGCT GGTGTGCGAG
GACCCGTCGA TCATCGGAGC GCCCTTCGAC GTCATGGAGT ACCGGCCAGG CGTGGTGGTC
TGGCGCTCGA TCCCCGAGGT GCTCCAGGTG GGCGACAACG TGGGCCACCG GATCGGCCTC
GCCGTGGCCG ACGCGCTGGC CGACCTGCAC ACCGTGGATC CGGCGTCGTG CGACCTGGCC
GATCTCGGCC GGCCGGTCGG CTTCCTGGAG CGCCAGATGG CCGGCTGGCA GAAGCGATGG
GCCGCGGTCG CCTCCGAGGC CGAGGCGGCC CTCATGGAGG AGGCCGCCAC CCGCCTCGGC
CGGAACGTGC CGACCAACCC GGTTCACTCG CTCCTGCACA ACGACTACCA GCTCACCAAC
GTCCAGTTCG CGGCCGGCGA CCCCGACCGT GTCTACTCGG TCTTCGACTG GGACATGGCC
ACTCTGGGCG ACCCGCTCGC CGACCTCGGC TCTCTCCTGA ACTACTGGCC CGACCCGTCC
GACACCGCGC AGAGCGCCGG TCTCTACCTG CCTGAGCAGG CCACCATCGG GCTTCCCACC
CGGGCGGAGA TGGCCGAACG GTACGCCGCA CGAAGCGGCT TCGGCCTCGA CAACCTCGGC
TGGTACGAGG CGTTCGCCGC CTACCGGGTG ACGGTGATCC TCCAGCAGCT GGCTGCGCGC
TACCAGCGGG GCGAGTCCAC CGACCCGCGC ATGGCGGAGC GGGCCCAGCT TGTGCACCCG
ATGGCGGTGC GAGCGTTGGA CCTGCTCGAC CACCATGGCG TCAAGTGA
|
|---|
| Protein sequence | MSWDFETDPE FAQQLEWIDQ FVRDEIEPVD LLVTNYGFDL SDPVRQALIP PLQQMVHERN
LWACHLGPNL GGKGYGQVKL ALMNEILGRS QCAPIVFGCQ APDSGNAEIL AHYGSERLKE
TYLRPLVAGE VVSCYSMTEP EGGSDPTQFR TSAVPDGDEW VINGTKWYSS HSRFASFIIV
LAVTDPDAEP HRRMSMFVVP ADAPGLETIR NVALFGHERH DGGHGYLRYN NVRVPADHLL
GKRGDGFVVS QTRLGGGRIH HAMRTVGLVR KALDMMCERV LSRYTQGERL ADKQMVQEML
ADSWTQLEQF RLLVLQTAWK IDKYDDYRKV RKDIAAVKAT MPKVLNDVAG RALQLHGSLG
TSDEMPFGDW IMESYRMGLA DGATEIHKIT VAKQLLRGRT PAPGLFPTGH LPALRAAAEA
KFADRLAAVR GSHGSSGPSA AVAPSTAAET PVTDDAPRPD DMPEIADVRP GEELDWDRLV
TYLSTALGVA AGAWSVKQFP NGSANLTYLV HVNDELSVVV RRPPLGTIAA GAHDMSREHR
VLSRLPNAYP RAPRSLLVCE DPSIIGAPFD VMEYRPGVVV WRSIPEVLQV GDNVGHRIGL
AVADALADLH TVDPASCDLA DLGRPVGFLE RQMAGWQKRW AAVASEAEAA LMEEAATRLG
RNVPTNPVHS LLHNDYQLTN VQFAAGDPDR VYSVFDWDMA TLGDPLADLG SLLNYWPDPS
DTAQSAGLYL PEQATIGLPT RAEMAERYAA RSGFGLDNLG WYEAFAAYRV TVILQQLAAR
YQRGESTDPR MAERAQLVHP MAVRALDLLD HHGVK
|
|---|
| |