Gene Franean1_3846 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagFranean1_3846 
Symbol 
ID5672209 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameFrankia sp. EAN1pec 
KingdomBacteria 
Replicon accessionNC_009921 
Strand
Start bp4569262 
End bp4570011 
Gene Length750 bp 
Protein Length249 aa 
Translation table11 
GC content74% 
IMG OID641242724 
Producttwo component LuxR family transcriptional regulator 
Protein accessionYP_001508144 
Protein GI158315636 
COG category[K] Transcription
[T] Signal transduction mechanisms 
COG ID[COG2197] Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value0.525033 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones12 
Fosmid unclonability p-value0.770826 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGAACGCCG GCCGCGACGC GGGTGGGAGC GTCGCCCCGC ACGCCGGTGG GAACCCCGAT 
CCGGACATCC GGGTGGTCGT CGCCGACGAC CAGGAGATCG TCCGCACCGG CCTGCGGATG
ATCCTCGACG CCCAGCCGGG CATCGTGGTC GTCGGCGTGG CGGTGGACGG CCGCCGGGCC
GTCGAGCTCG CACGCCGGCT GCGGCCCGAC GTCTGCCTGA TCGACATCCG GATGCCCGTG
ATGGACGGCA TCCAGGCCAC GCTCGCCCTT GCCGGGCCGG GGGTGGCTGA TCCGCTCGCC
GTCGTCGTCA TCACCACCTT CGACCTCGAC GAGTACGTCT ACGCCGCGTT GCGGGCCGGG
GCCCGCGGCT TCCTGCTCAA GGACGCCGGC CCCGATCTGC TGGCGCAGGC CGTGCACGCC
GCCGCCTGCG GCGACGCCCT CATCGCGCCG AACGTCACCG CCCGGCTGCT CGCCACCTTC
GCTGGGAGCG GGCCCGCACC GGTGCCGGCG CAGCCGGTCG AGGCGCTGAC CGACCGCGAG
GAACAGGTGC TCGCCACCGT GGCGGGCGGC CGGACGAACA GCGAGATCGC CGCCGATCTG
CACATCAGCC TCAGCACGGT CAAAACCCAC ATCGCCAGCC TCATGGCGAA GCTCGGCGCC
CGCAACCGCG TCGAGATCGC CCTCTGGGCC TACCAGACCG GACGGGTCGA CGTCCGCGGG
TCGGGGGCAG GCGGCGCGGG CGGGTGGTAA
 
Protein sequence
MNAGRDAGGS VAPHAGGNPD PDIRVVVADD QEIVRTGLRM ILDAQPGIVV VGVAVDGRRA 
VELARRLRPD VCLIDIRMPV MDGIQATLAL AGPGVADPLA VVVITTFDLD EYVYAALRAG
ARGFLLKDAG PDLLAQAVHA AACGDALIAP NVTARLLATF AGSGPAPVPA QPVEALTDRE
EQVLATVAGG RTNSEIAADL HISLSTVKTH IASLMAKLGA RNRVEIALWA YQTGRVDVRG
SGAGGAGGW