| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Franean1_3580 |
|---|
| Symbol | |
|---|
| ID | 5671949 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. EAN1pec |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009921 |
|---|
| Strand | - |
|---|
| Start bp | 4240519 |
|---|
| End bp | 4241610 |
|---|
| Gene Length | 1092 bp |
|---|
| Protein Length | 363 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 641242466 |
|---|
| Product | integrase catalytic region |
|---|
| Protein accession | YP_001507886 |
|---|
| Protein GI | 158315378 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG3415] Transposase and inactivated derivatives |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.364035 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATCCTAA CTGATAATCA ACGCAATATT CTCGAGTCCT TGGCTGGAGG TGGTGGGTAC
GACAGGTCTG CGGCTGCCCG CGCCCGTATG GTGCTATGGC GGGACGAAGG ATTCTCAGTG
CGGGAAATAG CCGAGAAGGC GGGCGCGTCG AAGCCTACCG TGCGACTGTG GCTGTCGCGC
TATGACGAGG AGGGGCCGGA CGGCTTGCTG AGCCGGGTGT CCCCGGGGCG GCCACGGGAG
GTCCCGGGGC GGGTACGGGC GCGGATCCTG GCGTTGACCA GGACCACTCC TCCACCGGAG
ACCGGACTGA GCCACTGGAC GAGCACCGAG ATGGCGCGGT ACCTGAAGCG CCGCGAAGGA
GTGTCGGTCT CGCACACCTT CGTGGCCCAG CTGTGGCGGG AGAACAATCT CCAGCCGCAC
CGGCACCGAG TCTTCAAGCT CTCGGCGGAC CCGGATTTCG AGGCCAAGGT GGAGGACGTC
GTCGGCCTCT ACCTTGATCC CCCCGAGGGC GCCGAGGTCC TGTCGATCGA CGAAAAGCCT
GGGGTGCAGG CACGCGACCG GACGCAGCCA CCGCGGCCGG TCGCCTCCGG CCGGGTCGCC
ACCCGCACGC ACGACTACCA GCGGAAGGGC ACGACCGACC TGTTCGCCGC CCTCGACGTC
GGGACGGGGC GGGTCACCGC CAGGTGCTTC CCCAGCCACA CCAGGGCCGA TTTCCTCACG
TTCATGGACC AGGTCATCGC GGAATACGGC GGTGCGGAGC TCCATGTCGT GGTCGACAAT
CTGGCCACCC ACTACGGCCC CGACGTCGAC ACATGGCTAC GCAGACACAA GAACGTCACG
TTCCATTTCA CCCCGTCCGG CAGTTCATGG CTCAACCAGG TCGAGAACTG GTTCGGTATT
CTCACCCGGA ACGCACTCCA GCGCGGGGCG TTCGTCTCGG TCCAGGACCT CGTCAACACC
ATCAACAACT ATGTCAAGAA CTGGAACTGG GACGCCCATC CGTTCGAGTG GACAGCCACC
GCAGAAGAGA TCGTAGCCAA GGTGGAGGTA CTCCACCGGG AATTCAGGAA GCTGCTCGCC
AACAACTTGT GA
|
|---|
| Protein sequence | MILTDNQRNI LESLAGGGGY DRSAAARARM VLWRDEGFSV REIAEKAGAS KPTVRLWLSR
YDEEGPDGLL SRVSPGRPRE VPGRVRARIL ALTRTTPPPE TGLSHWTSTE MARYLKRREG
VSVSHTFVAQ LWRENNLQPH RHRVFKLSAD PDFEAKVEDV VGLYLDPPEG AEVLSIDEKP
GVQARDRTQP PRPVASGRVA TRTHDYQRKG TTDLFAALDV GTGRVTARCF PSHTRADFLT
FMDQVIAEYG GAELHVVVDN LATHYGPDVD TWLRRHKNVT FHFTPSGSSW LNQVENWFGI
LTRNALQRGA FVSVQDLVNT INNYVKNWNW DAHPFEWTAT AEEIVAKVEV LHREFRKLLA
NNL
|
|---|
| |