| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Franean1_3463 |
|---|
| Symbol | |
|---|
| ID | 5671834 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. EAN1pec |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009921 |
|---|
| Strand | - |
|---|
| Start bp | 4092968 |
|---|
| End bp | 4093942 |
|---|
| Gene Length | 975 bp |
|---|
| Protein Length | 324 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 73% |
|---|
| IMG OID | 641242351 |
|---|
| Product | binding-protein-dependent transport systems inner membrane component |
|---|
| Protein accession | YP_001507771 |
|---|
| Protein GI | 158315263 |
|---|
| COG category | [E] Amino acid transport and metabolism
[P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG0601] ABC-type dipeptide/oligopeptide/nickel transport systems, permease components |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.236617 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGAGCGAGC ACCGCGGCGG CACGGCCGTC CGGCTGGTCG TGCCGAGACT GCTGCGGGCC
GCCGCGGTGC TGCTCCTGGT CGGCCTGGGG GTCTCGCTGC TGCTCGAGCT GACCCCCGGC
GACCCCGCCT TCGCCCTGCT GGGCGATCAG GCCAGCGCCG ACCAGATCTC CGCCGTCCAC
CGGGCACTGC ACCTCGACGA CCCGTTCGCC ACCCGCTACT GGCACTGGAT GAGCGGGGTG
GTGCGCGGCG ACTTCGGCAC CTCGTACCTG ACCGGCGAGC CCGTCCTCAC CTCGGTGGGG
CAGCGGATGC AGGTGACCGG CGAGCTGGTG CTGCTCGCCC TCGCCGTGGC ACTGGTCATC
TCGGTGCCGG TCGGGGTGCT CACCGCGCAC CGGGCGGACG GCTGGGCGGA CCGTTCCTGG
TCGATGGTCT CCTCCGCGCT GATCTCGACC CCGCCGTTCG TGCTGGCGCT GTTCCTGGTC
TATCTCCTCG CGCTGCAGGT CGGCGGGCTG CCCGCCACCG GCTGGGTGGC GCCCGCGGAC
GGCCTGGGCG AGAACCTGCG GCACGCCGTC CTGCCGGTGA CCACGCTGGC CCTCGCCCTG
GTGCCCACCT ACTCGCGGAT GCTGCGCGCG GACATGATCG CCACCCTCCA GGAGGACTTC
ATCCTCACCG CCCGCTCCCG GGGGCTGCCC GTCCGCCGCA TCCTGTTCCG GCACGCGCTG
CGGCCCTCGT CGTTCTCCCT GGTCACCCTG ACCGGGCTCA GCGTCGGGCA GCTGATCAGC
GGGGCGGTGG TCGTGGAGGT CCTCTTCGCG CTGCCCGGGA TCGGCCAGCT CGTCGTCACC
AGCGTCGTCG CGAAGGACGT GCCGGTGGTC CAGGGCGTCG TGATGTTCAT GGCGGTCGTG
TACTGCGTGG CCACCGTCGT CACCGATGTC CTCTACGGCT ACCTCGACCC CAGGGTCCGG
GTGCGGCCCG CATGA
|
|---|
| Protein sequence | MSEHRGGTAV RLVVPRLLRA AAVLLLVGLG VSLLLELTPG DPAFALLGDQ ASADQISAVH
RALHLDDPFA TRYWHWMSGV VRGDFGTSYL TGEPVLTSVG QRMQVTGELV LLALAVALVI
SVPVGVLTAH RADGWADRSW SMVSSALIST PPFVLALFLV YLLALQVGGL PATGWVAPAD
GLGENLRHAV LPVTTLALAL VPTYSRMLRA DMIATLQEDF ILTARSRGLP VRRILFRHAL
RPSSFSLVTL TGLSVGQLIS GAVVVEVLFA LPGIGQLVVT SVVAKDVPVV QGVVMFMAVV
YCVATVVTDV LYGYLDPRVR VRPA
|
|---|
| |