Gene Franean1_3239 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagFranean1_3239 
Symbol 
ID5671614 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameFrankia sp. EAN1pec 
KingdomBacteria 
Replicon accessionNC_009921 
Strand- 
Start bp3828278 
End bp3828880 
Gene Length603 bp 
Protein Length200 aa 
Translation table11 
GC content67% 
IMG OID641242132 
ProductTetR family transcriptional regulator 
Protein accessionYP_001507552 
Protein GI158315044 
COG category[K] Transcription 
COG ID[COG1309] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value0.845515 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones19 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACGACTC CACGCCGCAC CGGCACCGAG AGCTCGAAAA CCCGCGCGGT CCTGCTCGAC 
GTCACCGAAC GACTGATCAG AAACGAGGGC TACGCCGCGG TGAGCTCACG CAGCGTCGCC 
AACGCGGCAG GCGTCACACC CGCACTGATC CACTACTACT TCCCGACTTT GGACGATCTG 
TTCGTCGCGC TCTTCCGGCG CGGCGCCGAG AAGAACCTCG AACGCCAGAG ACGACTCCTC 
ACGTCACCCC AACCGCTGCG CGCGCTGTGG GCGTCCAGTA TCGAGCCCGC GGGCACCTCG 
CTGCTCACCG AGTTCATGGC ACTCGCGAAC CACCGCAAGA GCATCCGCCA GGAGATCGCG 
GACTACGCGA GGCAGTTCCG GGACCTGCAG ACCGAACTCC TCTCGAGCCG GCTGAAGGAG 
TACGGCCTCG ACCCCGCCCA GGTCCCGCCC GCCACCGTCC TTTTCATGAT CGGAGCCGCC 
AGCCGGGGCT TCGTGGCGGA GGACATGCTC GGTATCACCG ATGGGCACAC CGAGACGCTG 
GCACTCGTCG AACGGCTGCT GCAGCGCTTC GAGCCAGCCG CGGAGGCCGG CGACGAGCAG 
TGA
 
Protein sequence
MTTPRRTGTE SSKTRAVLLD VTERLIRNEG YAAVSSRSVA NAAGVTPALI HYYFPTLDDL 
FVALFRRGAE KNLERQRRLL TSPQPLRALW ASSIEPAGTS LLTEFMALAN HRKSIRQEIA 
DYARQFRDLQ TELLSSRLKE YGLDPAQVPP ATVLFMIGAA SRGFVAEDML GITDGHTETL 
ALVERLLQRF EPAAEAGDEQ