Gene Franean1_3233 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagFranean1_3233 
Symbol 
ID5671608 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameFrankia sp. EAN1pec 
KingdomBacteria 
Replicon accessionNC_009921 
Strand
Start bp3821500 
End bp3822258 
Gene Length759 bp 
Protein Length252 aa 
Translation table11 
GC content70% 
IMG OID641242126 
Productshort-chain dehydrogenase/reductase SDR 
Protein accessionYP_001507546 
Protein GI158315038 
COG category[I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only 
COG ID[COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones24 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones19 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGAACCGCT TCACCGATCA GGTCGTCATC GTCACCGGCG GCGGCCAGGG CCTCGGTGCG 
GCCATGGCCC GCCGCTTCGC CGCCGAAGGC GCCACCGTGG TCATCGGCGA CATCGACAAG
GACACCGCCT CCGCCCAGGC CGAGGCGCTG CACGCGGACA TCGGCCGGCC CGCGGAGGGC
ACCGGCGTCG ACGTCGCCGA CTCGACCGCG GTCACCGCGT GGATCGACGA CGTGGCCGCT
CGGCACGGCC GGATCGACGT TCTCATCAAC AACGCCGGAA TCATCCGGGA CAACCGGATC
ACCGACATCA GCGACGCCGA CTGGCACGCG GTGGTCGACG TCTCGCTCAC CGGCAGCTTC
CACTGCGCAC GGGCGGTGAT CCCACACATG CGCGCCCGGT CATACGGCCG CATCGTCTCC
TTCAGCTCCA TGAGCTGGCG CGGCAACTTC GGACAGGCGA ACTACGTGGC CGCCAAGGCC
GGGATCGTCG GCCTGACCCG GGCCATCGCG CTGGAGACCG CCCGCGACGG CATCACCGTC
AACGCCATCG CCCCCGGGCT GATCGAGACC CCGATGCTGG CCTCGATGAA CACCGCCGCG
CGGGAGAAGC TCATCGGCAA AGTGCCGCAG CGCACCACCG GCCAGCCCGT CGACATCGCC
GAAGCCGCGG CGTTCCTCAC CTGTCCGGCC GCCGGTTACA TCACCGGTGT CGTTCTCGAC
GTCGACGGCG GTCTCGGTAT CGGCTCGTCC ATCCGCTGA
 
Protein sequence
MNRFTDQVVI VTGGGQGLGA AMARRFAAEG ATVVIGDIDK DTASAQAEAL HADIGRPAEG 
TGVDVADSTA VTAWIDDVAA RHGRIDVLIN NAGIIRDNRI TDISDADWHA VVDVSLTGSF
HCARAVIPHM RARSYGRIVS FSSMSWRGNF GQANYVAAKA GIVGLTRAIA LETARDGITV
NAIAPGLIET PMLASMNTAA REKLIGKVPQ RTTGQPVDIA EAAAFLTCPA AGYITGVVLD
VDGGLGIGSS IR