Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Franean1_2252 |
Symbol | |
ID | 5670651 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Frankia sp. EAN1pec |
Kingdom | Bacteria |
Replicon accession | NC_009921 |
Strand | + |
Start bp | 2691316 |
End bp | 2692905 |
Gene Length | 1590 bp |
Protein Length | 529 aa |
Translation table | 11 |
GC content | 77% |
IMG OID | 641241172 |
Product | EmrB/QacA family drug resistance transporter |
Protein accession | YP_001506593 |
Protein GI | 158314085 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG2814] Arabinose efflux permease |
TIGRFAM ID | [TIGR00711] drug resistance transporter, EmrB/QacA subfamily |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.208479 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 6 |
Fosmid unclonability p-value | 0.0232648 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | GTGGCCGTCG AAGCTGGCGA AGTCGGCCGA CTGACCCTCA CCGGCCGCCA GGGACGCTGG GTCGTCGCGG CGGCGGTGCT GGGCTCCGCA CTGGCGTCGA TCGACGCGAC CGTCGTCGGC ATCGCCCTGC CGGCGCTCGG GCGCGCGTTC GACGCCGACC TTGCCGCCCT GCAGTGGGTG GTCAACGGCT ACGCGCTGGC GCTCGCCGGA CTGCTGCTCG TCGGCGGCTC GCTCGGCGAC CGCTACGGGC GGCGGCGGGT CTTCGTGGTC GGCGTGGTCT GGTTCGCGCT GATGTCCCTG GTGTGTGGGC TGGCACCGAA CGTGGAGATC CTCGTCGCCG CCCGGGCGCT GCAGGGCGTC GGCGCGGCCC TGCTCACCCC GGCCAGCCTG GCGATCCTGC AGGCGTCGTT CGACGAGGCC GACCGCGGCC GGGCGATCGG CGCGTGGACG GGGCTCGGCG GGGTGGCCAC GGCCGCCGGA CCCTTCCTCG GCGGCTGGCT CATCGAGGCG TTCTCCTGGC GGCTGATCTT CCTGATCAAC CTGCCGCTGG CCGCGGTCGT GGTCGCGGTC GCGGTGCGCC ACGTCCCCGA GAGCCACAAC CCTGACGTCC GCGGGCGGCC CGACCTGCTC GGCGGCGCCC TGGTGACCGC CGGTCTGGTC GGCGTCGTGT TCGCGCTCAT CGACGGCCCG GCCAGCGGCT GGACGTCCGC CCCGGTGCTG GTCGGGCTGG TCGGCGGGGT CGCGCTGCTG GCCGGGTTCG TCGCCCGCGA ACACCGGGCG GCCGACCCGG TGGTCCCGCT GGAGATGTTC GCCTCCCGGC AGTTCACGGC CGCGAACGCC GTCACCTTCC TGCAGTACGC GGCGCTGGGC GGGGCGCTGT TCCTGCTGCC GATTCAGCTC CAGCAGGTCA GCGGCTTCAG CCCGCTCGCC GCCGGGACGG CGCTGCTGCC TGTCACCGTG ATGATGCTGC TGTTCTCCGC GCGGGCCGGC GCGCTGGCCA CCCGGATCGG GCCGCGGCTG CCGATGACGG TCGGCCCCGT CGTCGCCGGC GCCGGCCTGC TGCTGGTCAC CCGGGCCGGC CCGGACGCCT TCTACCTCAC GGACGTCCTG CCCGGTGCCG TCGTGCTGGG CCTCGGGCTC GCCACCTGCG TGGCCCCGTT GACGTCCACC ACGCTCGCCG CGGTGCCGGC GCATCATGCC GGGGCGGCGT CGGCGGTGAA CAATGACGTC GCGCGCACCG GCGGCCTGGT CGCCGTCGCC GTGCTGCCCG CCCTCGCCGG GCTGGGTGGC ACCGCCTACC TCGACCCGGC CCTGTTCGAC CGCGGGTTCC GCCGGGCGAT GGTCATCTCG GCGCTGGTGT GCGCGGCCGG CGGTCTGCTC GCCGCGCTCG GTATCCGCAA CCCGCGCCGG CCGGCCGCCG AGCTGCCGGC CGCCGAGCGG GCCTCCGCGC GGATCGGGCG GCAGGCGGGG GAGCGGGTCT GCTGCCCACT GGACGCACCC GGCCTGCGTG CCACACCGGG CCCGCGGGGC ACCCCGGGCC CGGGTGCCAC CTCGGGCCCG CCCGCCGTCC CGGGCGGGCC CGCCGGCTGA
|
Protein sequence | MAVEAGEVGR LTLTGRQGRW VVAAAVLGSA LASIDATVVG IALPALGRAF DADLAALQWV VNGYALALAG LLLVGGSLGD RYGRRRVFVV GVVWFALMSL VCGLAPNVEI LVAARALQGV GAALLTPASL AILQASFDEA DRGRAIGAWT GLGGVATAAG PFLGGWLIEA FSWRLIFLIN LPLAAVVVAV AVRHVPESHN PDVRGRPDLL GGALVTAGLV GVVFALIDGP ASGWTSAPVL VGLVGGVALL AGFVAREHRA ADPVVPLEMF ASRQFTAANA VTFLQYAALG GALFLLPIQL QQVSGFSPLA AGTALLPVTV MMLLFSARAG ALATRIGPRL PMTVGPVVAG AGLLLVTRAG PDAFYLTDVL PGAVVLGLGL ATCVAPLTST TLAAVPAHHA GAASAVNNDV ARTGGLVAVA VLPALAGLGG TAYLDPALFD RGFRRAMVIS ALVCAAGGLL AALGIRNPRR PAAELPAAER ASARIGRQAG ERVCCPLDAP GLRATPGPRG TPGPGATSGP PAVPGGPAG
|
| |