Gene Franean1_2004 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagFranean1_2004 
Symbol 
ID5670405 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameFrankia sp. EAN1pec 
KingdomBacteria 
Replicon accessionNC_009921 
Strand
Start bp2409664 
End bp2410488 
Gene Length825 bp 
Protein Length274 aa 
Translation table11 
GC content70% 
IMG OID641240925 
Productenoyl-CoA hydratase/isomerase 
Protein accessionYP_001506347 
Protein GI158313839 
COG category[I] Lipid transport and metabolism 
COG ID[COG1024] Enoyl-CoA hydratase/carnithine racemase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones22 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0169524 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGACAGAGG CGGGCACGGT GACGGCGGAG ACCGATGAGA AGGAGATCCT GACCGAGATC 
CGCGACGGCG TCTGCATCAT CACGTTCAAC CGGCCGCAGG CACGCAACGC GGTGACCAGC
ACGATGGCGC TCGCCTATGC GGCCGCCCTG CGTGCGGCGG ATGACGACCC GCAGGTCCGG
GCAATCGTGG TCACTGGTGC CGGTGCGGGC TTCTGCGCCG GAGCCGATCT TGCGGTGCTG
CGCGACGGCG CCGAAGCGAT CAAGAAGTTC GTACCGGCTC GCGAGGACCT GCCGGCCCTC
ACGATGCGCC TGCGCAAGCC GGTGATCGCC GCGGTGAACG GCGCCGCGGT GGGCATCGGT
TTCGCCTACA TGATGGGCAG CGACATCCGG ATCGCCGCCG AGTCAGCCAA GATCGCGACC
GCGTTCTCCC GGCTCGGTCT CGCGGCGGAG TACGGCGTCT CCTGGCTGCT GCCACGGGCC
ATCGGCCTCC AGCCGGCGCT GGACCTGCTT CTCACCGGGC GGACCATCGG CGCCCAGGAG
GCTGCGAAGC TCGGGCTCAT CCAGCAGGTC GTCCCCGACG GGACCGTTCT GGAGGCCGCG
GTCGCCTACG CGAAGGACCT GGTCGAGAAC TGCTCGCCGT TCTCGCTGGC AATGATCAAG
GAACAGGTCT ACCTGGACCT CGATCGTTCC CAGGACGACG CGCTGACCGA CACGCTCCGC
CGGATGGACA TCGCCTTTGA GGGCCCCGGG CTCGCGGAGG CGCTGACCGC GCGCACGGAG
AAGCGGCCCG CCGTCTTCGA CGCGCTCCCT ACCCGGGAGG CGTGA
 
Protein sequence
MTEAGTVTAE TDEKEILTEI RDGVCIITFN RPQARNAVTS TMALAYAAAL RAADDDPQVR 
AIVVTGAGAG FCAGADLAVL RDGAEAIKKF VPAREDLPAL TMRLRKPVIA AVNGAAVGIG
FAYMMGSDIR IAAESAKIAT AFSRLGLAAE YGVSWLLPRA IGLQPALDLL LTGRTIGAQE
AAKLGLIQQV VPDGTVLEAA VAYAKDLVEN CSPFSLAMIK EQVYLDLDRS QDDALTDTLR
RMDIAFEGPG LAEALTARTE KRPAVFDALP TREA